Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,629,030 – 3,629,135 |
Length | 105 |
Max. P | 0.500000 |
Location | 3,629,030 – 3,629,135 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 81.08 |
Mean single sequence MFE | -27.77 |
Consensus MFE | -18.86 |
Energy contribution | -18.40 |
Covariance contribution | -0.46 |
Combinations/Pair | 1.39 |
Mean z-score | -1.26 |
Structure conservation index | 0.68 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3629030 105 + 27905053 UUCCGUUUGGGAAUUCACGGGGGGUGCAACAGUGGCCACGAAAAUGGGUACUUUGAUUGGGGCAUUCAAGGAGUUGAAUGUCUCAAUGUAAUAACUGAUUUGUAU ((((.....))))....(((..(.(((...((((.(((......))).))))...((((((((((((((....))))))))))))))))).)..)))........ ( -30.30) >DroPse_CAF1 2979 104 + 1 UUCAACGAUAGAAAUAGCAGGUGGUGCUGAAGUUCCCACACAAAUUGGCAGCCUUAGAGGAGGUUUCAUGUGGCUUAGAGUCUCGAUAUAAUAACUGACUUGUG- ..........(((.(((((.....)))))...)))(((((.....(((.((((((....))))))))))))))....(((((..............)))))...- ( -19.44) >DroSec_CAF1 3145 105 + 1 UUCCGUUUGGCAAUUCACGGGGGGUGCAACAGUGGCCACGAAAAUGGGCACUUUGAUUGGGGCAUUCAAGAAGUUGAAUGUCUCAAUGUAAUAACUGAUUUGUAU .........((((.(((.(..(..(((...((((.(((......))).))))...((((((((((((((....))))))))))))))))).)..)))).)))).. ( -32.20) >DroSim_CAF1 4469 105 + 1 UUCCGUAUGGGAAUUCACGGGGGGUGCAACAGUGGCAACGAAAAUGGGUACUUUGAUUGGGGCAUUCAAGAAGUUGAAUGUCUCAAUGUAAUAACUGAUUUGUAU ((((.....))))....((((((((((..((.((....))....)).))))))).((((((((((((((....)))))))))))))).......)))........ ( -29.40) >DroEre_CAF1 4192 105 + 1 UUCCAAAGAAGAAUUUACGGGGGGUGCAGCAGUGGCCACGAAAAUGGGCAGCUUGAUUGGGGCAUUCGGGAAGUUGAAUGUCUCAAUGUAAUAACUGAUUUGUAU ...((((..((...((((..(((.(((..((.((....))....)).))).))).((((((((((((((....))))))))))))))))))...))..))))... ( -28.00) >DroYak_CAF1 3880 105 + 1 UUCCAAAGAAGAAUAUACGGGGGGUGCAACAGUGGCCACGAAAAUGGGUAGUUUGAUUGGGGCAUUCAAGAAGUUGGAUGUCUCAAUAUAAUAACUGAUUUGUAU .................((..((.(((....))).)).)).((((.(((.(((..((((((((((((((....))))))))))))))..))).))).)))).... ( -27.30) >consensus UUCCAUAUGAGAAUUCACGGGGGGUGCAACAGUGGCCACGAAAAUGGGCACUUUGAUUGGGGCAUUCAAGAAGUUGAAUGUCUCAAUGUAAUAACUGAUUUGUAU ................(((((.(((....(((..(((.........)))...)))((((((((((((((....))))))))))))))......)))..))))).. (-18.86 = -18.40 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:32 2006