Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,628,324 – 3,628,427 |
Length | 103 |
Max. P | 0.500000 |
Location | 3,628,324 – 3,628,427 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 76.31 |
Mean single sequence MFE | -31.48 |
Consensus MFE | -15.76 |
Energy contribution | -15.84 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -1.73 |
Structure conservation index | 0.50 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3628324 103 + 27905053 ACA-AGCAAUUUGUU-----UUCGGGGUGUUGGCUGUGUAACCCC--UUGGCCACUUUGCUGCCGCAUAACGUGGCACAAUUAGGACCUCGAAAUUA-UUUGGGC-------ACUCACU ...-.((.......(-----((((((((.(((((((.........--.)))))...(((.((((((.....)))))))))..)).)))))))))...-.....))-------....... ( -30.56) >DroPse_CAF1 2258 117 + 1 ACAAAGUACAUUAUUGGAUGUUUUGGGUGUUGGCC-UCCAACC-CGUUCGACCACUUUGUUGCCACAUUAUGUGGCACAAUUAAGACCUCGACAUCUUUUUGGGUGGUCUGCUUUUGCU ..((((((.......(((((..(((((.(....).-)))))..-)))))(((((((....((((((.....))))))(((..((((........)))).)))))))))))))))).... ( -35.50) >DroSec_CAF1 2453 102 + 1 ACA-AGCACUUUGUU-----UUCGGGGUGUUGGCUGUGUAACC-C--UUGGCCACUUUGUUGCCGCAUAACGUGGCACAAUUAGGACCUCGAAAUUA-UUUGGGC-------ACUCACU ...-.((.((.((.(-----((((((((.(((((((.......-.--.)))))...((((.(((((.....)))))))))..)).))))))))).))-...))))-------....... ( -31.20) >DroSim_CAF1 3778 91 + 1 ACA-AGCACUUUG----------------UUGGCUGUGUAACC-C--UUGGCCACUUUGUUGCCGCAUAACGUGGCACAAUUAGGACCUCGAAAUUA-UUUGGGC-------ACUCACU ...-(((.(....----------------..))))(((...((-(--..((((...((((.(((((.....)))))))))...)).)).........-...))).-------...))). ( -21.94) >DroYak_CAF1 3209 100 + 1 ACA-AGCACUUUGUU-----UUCGGGGUGUUGGCU--GUAACC-C--UUGGCCACUUUGCUGCCGCAUAACGUGGCACAAUUAGGAGCCCGAAAUUA-UUUGGGC-------ACUCACU ...-(((((((((..-----..)))))))))((((--(.....-.--.)))))...(((.((((((.....)))))))))......(((((((....-)))))))-------....... ( -34.20) >DroPer_CAF1 2104 117 + 1 ACAAAGUACAUUAUUGGAUGUUUUGGGUGUUGGCC-UCCAACC-CGUUCGACCACUUUGUUGCCACAUUAUGUGGCACAAUUAAGACCUCGACAUCUUUUUGGGUGGUCUGCUUUUGCU ..((((((.......(((((..(((((.(....).-)))))..-)))))(((((((....((((((.....))))))(((..((((........)))).)))))))))))))))).... ( -35.50) >consensus ACA_AGCACUUUGUU_____UUCGGGGUGUUGGCU_UGUAACC_C__UUGGCCACUUUGUUGCCGCAUAACGUGGCACAAUUAGGACCUCGAAAUUA_UUUGGGC_______ACUCACU ..............................(((((..............)))))..(((.((((((.....))))))))).......((((((.....))))))............... (-15.76 = -15.84 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:30 2006