Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 143,745 – 143,862 |
Length | 117 |
Max. P | 0.716111 |
Location | 143,745 – 143,862 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.45 |
Mean single sequence MFE | -40.78 |
Consensus MFE | -29.73 |
Energy contribution | -29.53 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.28 |
Mean z-score | -1.31 |
Structure conservation index | 0.73 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 143745 117 - 27905053 CUUCAACUACCACCAAGCAGGCGCAAGUGCCGACCUGCAGCGUGUGACGGUGUCGCGUGACCCCUUAGCCAUCGCCGAGCGUGGCAAGGUUGGAAUCCCGUCAUCGCACAGUGAGUG .......((((((...((((((((....).)).))))).(((.(((((((.(((....))).((((.((((.(((...)))))))))))........))))))))))...))).))) ( -42.80) >DroPse_CAF1 6205 111 - 1 CUUCAAUUAUCAUCAAUC------CGACGCUGACCUGCAGAGGGUGACCGUAACGCGUGACCCUUUGGCAAUUGCCGAAAGGGGCAAGGUCGGCAUUCCAUCGUCUCACAGCGAGUG ..................------..((((((((((((...((....))...........(((((((((....))).)))))))).))))))))......((((......)))))). ( -39.00) >DroWil_CAF1 6632 111 - 1 UUUCAAUUAUCAUCAACC------UGAUGCCGACCUGCAAAGAGUCACGGUGACGCGUGACCCUUUGGCCAUUGCCGAAAGGGGCAAGGUCGGCAUACCGUCAUCGCAUAGUGAGUG .((((.............------..((((((((((.(((((.((((((......)))))).)))))(((....((....))))).))))))))))...............)))).. ( -42.91) >DroMoj_CAF1 9310 105 - 1 UUUCAAUUAUCAUCAG------------GCUGACCUGCAGAGGGUGACAGUGACACGUGACCCUUUGGCCAUUGCUGAACGGGGCAAGGUCGGCAUACCGUCAUCCCAUAGCGAGUG ................------------((((((((.((((((((.((........)).))))))))(((.(((.....)))))).)))))))).((((((.........))).))) ( -34.70) >DroAna_CAF1 6409 111 - 1 CUUCAAUUACCAUCACG------CCGGCUCCGACCUACAGCGGGUCACCGUGACCCGUGACCCGUUGGCUGUCGCCGAGAGGGGUAAGGUCGGCAUCCCGUCGUCGCACAGCGAGUG .............((((------.(((..(((((((((.(((((((.....)))))))..(((.(((((....)))))..))))).)))))))....))).).((((...))))))) ( -46.30) >DroPer_CAF1 6180 111 - 1 CUUCAAUUAUCAUCAAUC------CGACGCUGACCUGCAGAGGGUGACCGUAACGCGUGACCCUUUGGCAAUUGCCGAAAGGGGCAAGGUCGGCAUUCCAUCGUCUCACAGCGAGUG ..................------..((((((((((((...((....))...........(((((((((....))).)))))))).))))))))......((((......)))))). ( -39.00) >consensus CUUCAAUUAUCAUCAAGC______CGACGCCGACCUGCAGAGGGUGACCGUGACGCGUGACCCUUUGGCCAUUGCCGAAAGGGGCAAGGUCGGCAUACCGUCAUCGCACAGCGAGUG ............................((((((((.((((((((.((........)).))))))))......(((......))).))))))))......((((......))))... (-29.73 = -29.53 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:12 2006