Locus 12

Sequence ID 3R_DroMel_CAF1
Location 143,745 – 143,862
Length 117
Max. P 0.716111
window25

overview

Window 5

Location 143,745 – 143,862
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 79.45
Mean single sequence MFE -40.78
Consensus MFE -29.73
Energy contribution -29.53
Covariance contribution -0.19
Combinations/Pair 1.28
Mean z-score -1.31
Structure conservation index 0.73
SVM decision value 0.39
SVM RNA-class probability 0.716111
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 143745 117 - 27905053
CUUCAACUACCACCAAGCAGGCGCAAGUGCCGACCUGCAGCGUGUGACGGUGUCGCGUGACCCCUUAGCCAUCGCCGAGCGUGGCAAGGUUGGAAUCCCGUCAUCGCACAGUGAGUG
.......((((((...((((((((....).)).))))).(((.(((((((.(((....))).((((.((((.(((...)))))))))))........))))))))))...))).))) ( -42.80)
>DroPse_CAF1 6205 111 - 1
CUUCAAUUAUCAUCAAUC------CGACGCUGACCUGCAGAGGGUGACCGUAACGCGUGACCCUUUGGCAAUUGCCGAAAGGGGCAAGGUCGGCAUUCCAUCGUCUCACAGCGAGUG
..................------..((((((((((((...((....))...........(((((((((....))).)))))))).))))))))......((((......)))))). ( -39.00)
>DroWil_CAF1 6632 111 - 1
UUUCAAUUAUCAUCAACC------UGAUGCCGACCUGCAAAGAGUCACGGUGACGCGUGACCCUUUGGCCAUUGCCGAAAGGGGCAAGGUCGGCAUACCGUCAUCGCAUAGUGAGUG
.((((.............------..((((((((((.(((((.((((((......)))))).)))))(((....((....))))).))))))))))...............)))).. ( -42.91)
>DroMoj_CAF1 9310 105 - 1
UUUCAAUUAUCAUCAG------------GCUGACCUGCAGAGGGUGACAGUGACACGUGACCCUUUGGCCAUUGCUGAACGGGGCAAGGUCGGCAUACCGUCAUCCCAUAGCGAGUG
................------------((((((((.((((((((.((........)).))))))))(((.(((.....)))))).)))))))).((((((.........))).))) ( -34.70)
>DroAna_CAF1 6409 111 - 1
CUUCAAUUACCAUCACG------CCGGCUCCGACCUACAGCGGGUCACCGUGACCCGUGACCCGUUGGCUGUCGCCGAGAGGGGUAAGGUCGGCAUCCCGUCGUCGCACAGCGAGUG
.............((((------.(((..(((((((((.(((((((.....)))))))..(((.(((((....)))))..))))).)))))))....))).).((((...))))))) ( -46.30)
>DroPer_CAF1 6180 111 - 1
CUUCAAUUAUCAUCAAUC------CGACGCUGACCUGCAGAGGGUGACCGUAACGCGUGACCCUUUGGCAAUUGCCGAAAGGGGCAAGGUCGGCAUUCCAUCGUCUCACAGCGAGUG
..................------..((((((((((((...((....))...........(((((((((....))).)))))))).))))))))......((((......)))))). ( -39.00)
>consensus
CUUCAAUUAUCAUCAAGC______CGACGCCGACCUGCAGAGGGUGACCGUGACGCGUGACCCUUUGGCCAUUGCCGAAAGGGGCAAGGUCGGCAUACCGUCAUCGCACAGCGAGUG
............................((((((((.((((((((.((........)).))))))))......(((......))).))))))))......((((......))))... (-29.73 = -29.53 +  -0.19) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:12 2006