Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,612,329 – 3,612,420 |
Length | 91 |
Max. P | 0.748170 |
Location | 3,612,329 – 3,612,420 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 84.78 |
Mean single sequence MFE | -32.81 |
Consensus MFE | -24.49 |
Energy contribution | -25.47 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.17 |
Mean z-score | -2.63 |
Structure conservation index | 0.75 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3612329 91 + 27905053 GGAUCC---UUCUGACCAGGGAUAUGGGGGAGCAGCUGGAGCAAAAGCUCCCUCUCCCUCAAUCAAAGUCAAAGCUCUUUGUUCUGGAGCCUCU ......---...((((....(((.((((((((.((..(((((....))))))))))))))))))...))))..(((((.......))))).... ( -33.80) >DroSec_CAF1 69918 91 + 1 GGAUCC---CUCUGACCAGGGAUAUGGGGGAGCAGCUGGAGCAAAAGCUCCCUCUCCCUCAACCAAAGUCAAAGCUCUUUGUUCUGAAGCCACU ((((((---((......)))))).((((((((.((..(((((....))))))))))))))).))....(((.(((.....))).)))....... ( -34.70) >DroSim_CAF1 63311 91 + 1 GGAUCC---CUCUGACCAGGGGUAUGGGGGAGCAGCUGGAGCAAAAGCUCCCUCUCCCUCAACCAAAGUCAAAGCUCUUUGUUCUGGAGCCACU ((((((---((......)))))).((((((((.((..(((((....))))))))))))))).)).........(((((.......))))).... ( -37.20) >DroEre_CAF1 69496 91 + 1 GGAUCC---CUCCAACCAGGGAUAUGGGGGAGCCGCUGGAGCAGCAGCUCCCUCUCCCUCAAUCAAAGUCAAAGCUCUUUGUUCUGGAAGCACU (((...---.)))..(((((((...((((((((.((((...)))).)))))))))))).....(((((........)))))...)))....... ( -33.80) >DroYak_CAF1 87095 91 + 1 GGAUCC---UUCCAACCAGGGAUAUGGGGGAGCAGCUGGAGCAUAAGCUCCCUCAGCCCCAAUCAAAGUCAAACCUCUUUGUUCUGGAACCACU ((.(((---.........(((...(((((((((.((....))....)))))))))..)))...(((((........)))))....))).))... ( -31.80) >DroAna_CAF1 60162 92 + 1 GGAACCAUCCUCUGGCCAGGGAUAAGCAGGAGCAGCUGGUGCACAAGCGCCCUCAUUCUCCAGCAAAACCAAAGCCCUUUCAUCUGGAGCCU-- ((..(((......(((...((....((.((((.....(((((....)))))......)))).))....))...)))........)))..)).-- ( -25.54) >consensus GGAUCC___CUCUGACCAGGGAUAUGGGGGAGCAGCUGGAGCAAAAGCUCCCUCUCCCUCAAUCAAAGUCAAAGCUCUUUGUUCUGGAGCCACU (((.......)))..((((((...((((((((.((..(((((....)))))))))))))))..(((((........)))))))))))....... (-24.49 = -25.47 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:28 2006