Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,607,800 – 3,607,897 |
Length | 97 |
Max. P | 0.663430 |
Location | 3,607,800 – 3,607,897 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 78.05 |
Mean single sequence MFE | -28.42 |
Consensus MFE | -21.69 |
Energy contribution | -21.33 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -1.03 |
Structure conservation index | 0.76 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663430 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3607800 97 - 27905053 -----UAUCGUAUCGAUUCAUCCAUUACAGUCCGCUGCCCACAGCGAGGGUUACCGCACCUUUUGCUGUGGUCCAUGCAAGACGGAUCCUUUAAAACUGGAG -----...............(((((((.(((((((((((((((((((((((......))).)))))))))).....)).)).))))..)).)))...)))). ( -28.00) >DroSim_CAF1 58843 97 - 1 -----UAUCAUAUCGAUUCUUUCAUUACAGUCCGCUGCUCACAGCGAGGGUUACCGCACCUUUUGCUGUGGUCCCUGCAAGACGGAUCCUCUGAAAUUGGAG -----.......((((((...(((.....((((((((((((((((((((((......))).)))))))))).....)).)).)))))....))))))))).. ( -26.40) >DroEre_CAF1 64533 94 - 1 --------CAUACCGGUUCUUUCGUCACAGUCCGCUGCCCACAGCGAGGGUUACCGCACCUUCUGCUGUGGUCCCUGCAAGACGGAUCCCCUAAAACUGGAG --------....((((((..((((((.(((....))).(((((((((((((......)))))).))))))).........))))))........)))))).. ( -34.10) >DroYak_CAF1 82535 101 - 1 AUCGUUUUCAUAUCGAUUUU-UUAUCACAGUCCGCUGCCCACAGCGAGGGUUACCGCACCUUUUGCUGUGGUCCCUGCAAGACAGAUCCUUUAAAAUUGGAG ............((((((((-........((((((((....)))))((((..((((((.(....).))))))))))....))).........)))))))).. ( -25.73) >DroAna_CAF1 55554 97 - 1 -----GUUCAUAUAAAUUUAAUUUUAAUAGUUGGCUGCACACAGUGAGGGCUACCGGACCUUCUGCUGUGGUCCCUGCAAGACAGAUCCGCUCAAGCUGGAG -----........................((.((..((.((((((((((((.....).))))).)))))))).)).))........(((((....)).))). ( -22.80) >DroPer_CAF1 8964 88 - 1 --------CCUGCCCC------UUCCCCAGUUGGCGGCACACAGCGAGGGGUAUCGCACCUUCUGCUGUGGUCCCUGCAAGACGGAUCCCUUGAAGCUGGAG --------........------....((((((((.(((.(((((((..((((.....))))..))))))))))))..((((........)))).)))))).. ( -33.50) >consensus _____U_UCAUAUCGAUUCUUUCAUCACAGUCCGCUGCCCACAGCGAGGGUUACCGCACCUUCUGCUGUGGUCCCUGCAAGACGGAUCCUCUAAAACUGGAG .............................(((.((.(.((((((((((((........))))).))))))).)...))..)))...(((.........))). (-21.69 = -21.33 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:27 2006