Locus 1197

Sequence ID 3R_DroMel_CAF1
Location 3,605,998 – 3,606,104
Length 106
Max. P 0.647780
window1962

overview

Window 2

Location 3,605,998 – 3,606,104
Length 106
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 91.19
Mean single sequence MFE -15.97
Consensus MFE -13.32
Energy contribution -13.43
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.08
Structure conservation index 0.83
SVM decision value 0.24
SVM RNA-class probability 0.647780
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3605998 106 + 27905053
CAGCUUACAUACACAGUACAGGAUAUUAUAGAAUGUAACUUUCACGUUACCUAGCAAUUAUUUCUUACCUCGAAAUGUAAGUUAUUUGUAAGUUACAAAAUACUUC
.(((((((((.....(((..(((((...(((...(((((......)))))))).....)))))..)))......))))))))).((((((...))))))....... ( -16.90)
>DroSec_CAF1 63675 106 + 1
CAGCUUACAUACACAUUACAGGAUAUUAUUGAAUGUAUCUUUCACCUUAUCUACCAAUUAUUUCUUACCUUGAAAUAUAAAUUACUUGUAAGUUACAGCAUACUUU
.((((((((...........(((((....((((.......))))...)))))......((((((.......)))))).........))))))))............ ( -15.50)
>DroSim_CAF1 57068 106 + 1
CAGCUUACAUACACAUUACAGGAUAUUAUUGAAUGUAUCUUUCACCUUAUCUACCAAUUAUUUCUUACCUUGAAAUAUAAAUUACUUGUAAGUUACAGCAUAAUUU
.((((((((...........(((((....((((.......))))...)))))......((((((.......)))))).........))))))))............ ( -15.50)
>consensus
CAGCUUACAUACACAUUACAGGAUAUUAUUGAAUGUAUCUUUCACCUUAUCUACCAAUUAUUUCUUACCUUGAAAUAUAAAUUACUUGUAAGUUACAGCAUACUUU
.((((((((..........(((((((........))))))).................((((((.......)))))).........))))))))............ (-13.32 = -13.43 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:26 2006