Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,604,145 – 3,604,239 |
Length | 94 |
Max. P | 0.816876 |
Location | 3,604,145 – 3,604,239 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 79.05 |
Mean single sequence MFE | -25.84 |
Consensus MFE | -17.86 |
Energy contribution | -18.45 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.23 |
Mean z-score | -1.58 |
Structure conservation index | 0.69 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3604145 94 - 27905053 CAAUGGCGCUUUCGUGGUAAUUGGCAUUUGGCUUUGGCUUGUCCGAAUGCCAAACU---GGCUAAACUAAAUGCAUAACUA----GUUUCGGCUU--CUUGUU ...((.(((....))).)).((((((((((((........).)))))))))))...---((((((((((..........))----)))).)))).--...... ( -24.70) >DroPse_CAF1 6840 87 - 1 CAAUGGCAUUUUCGUGGUAAUUGGCAUUUGGCUUUGGCAUGUCCGAGUGCCAAACUCUGGACUAAGCUAAAUGCAUAACCA----GUGUGC------------ .....((((...(.((((.....(((((((((((......((((((((.....)))).)))).)))))))))))...))))----).))))------------ ( -30.80) >DroSec_CAF1 61829 88 - 1 CAAUGGCGCUUUCGUGGUAAUUGGCAUUUGGCUUUGGCAUGUCCGAAUGCCAAACU---GGCUAAACUAAAUGCAUAACUA----GUU------U--CUUGUU (((.((.(((......(((.((((..((((((((((((((......)))))))...---))))))))))).)))......)----)).------)--)))).. ( -22.30) >DroWil_CAF1 15665 100 - 1 CAAUGGCAUUUUCGCGGUAAUUGGCAUUUGGUUUUGGCAUGCCGGACUGCUAAACU---GGAUACACUAAAUGCAUAAGUAUCAUGUCUAAAGUUCGCUUGUU ....(((((.....((((..((((((((((((........)))))).)))))))))---)(((((.............))))))))))..(((....)))... ( -21.62) >DroAna_CAF1 49938 94 - 1 CAAUGGCGUUCUCGUGGUAAUUGGCAUUUGGCUUCGGCAUGUCCGAACGCCAAACA---GGGUAAACUAAAUGCAUAACUA----GUUUCGACUU--CUUGUU ...((((((((..((.(....).)).....((....))......))))))))((((---(((.((((((..........))----)))).....)--)))))) ( -24.80) >DroPer_CAF1 6818 87 - 1 CAAUGGCAUUUUCGUGGUAAUUGGCAUUUGGCUUUGGCAUGUCCGAGUGCCAAACUCUGGACUAAGCUAAAUGCAUAACCA----GUGUGC------------ .....((((...(.((((.....(((((((((((......((((((((.....)))).)))).)))))))))))...))))----).))))------------ ( -30.80) >consensus CAAUGGCAUUUUCGUGGUAAUUGGCAUUUGGCUUUGGCAUGUCCGAAUGCCAAACU___GGCUAAACUAAAUGCAUAACUA____GUUUCC___U__CUUGUU .....((((((...((((..((((((((((((........).))))))))))).......))))....))))))............................. (-17.86 = -18.45 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:24 2006