Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,594,937 – 3,595,032 |
Length | 95 |
Max. P | 0.802437 |
Location | 3,594,937 – 3,595,032 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 85.96 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -20.95 |
Energy contribution | -22.57 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.19 |
Mean z-score | -1.86 |
Structure conservation index | 0.76 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3594937 95 + 27905053 AAAACUCUACUGAGCGCACCGCUGUGUCGGAGCAGUAAGCAUUACAUUUAACCGAGUGUGUGGUCCAAAUCCCAUUGAGCCACUGGUUACACAGU ........((((...((.(((......))).)).((((.((..((((((....))))))((((..(((......)))..)))))).)))).)))) ( -25.30) >DroSec_CAF1 45226 88 + 1 AAAACUCUGCUGAGCGCACAUCUCAGUCGGAGUAGUAAGCAUAACAUUUAACCGAGUGUGUGGUC-------CAUUGAGCCACUGGUUACACAGU ...(((((((((((.......))))).)))))).((((.((..((((((....))))))(((((.-------......))))))).))))..... ( -27.00) >DroSim_CAF1 46067 95 + 1 AAAACUCUACUGAGCGCACCGCUCAGUCGGAGUAGUAAGCAUAACAUUUAACCGAGUGUGUGGUCCAAAUCCCAUUGAGCCACUGGUUACACAGU ...(((((((((((((...)))))))).))))).((((.((..((((((....))))))((((..(((......)))..)))))).))))..... ( -34.00) >DroYak_CAF1 68882 95 + 1 AAAAGUCUGCUGAGCGCACCGCUGAGUCGAAGUAGUGAGCAUUAUAUUCAAUCGGGUGGGUAGUCUAAAUCCCAUUCAGCUACUGGUUACACAGU ........(((((((.(((..((.......))..))).))...............(((((..........)))))))))).((((......)))) ( -24.50) >consensus AAAACUCUACUGAGCGCACCGCUCAGUCGGAGUAGUAAGCAUAACAUUUAACCGAGUGUGUGGUCCAAAUCCCAUUGAGCCACUGGUUACACAGU ...((((((((((((.....))))))).))))).((((.((..((((((....))))))(((((.(((......))).))))))).))))..... (-20.95 = -22.57 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:19 2006