Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,592,953 – 3,593,052 |
Length | 99 |
Max. P | 0.731129 |
Location | 3,592,953 – 3,593,052 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.26 |
Mean single sequence MFE | -22.42 |
Consensus MFE | -9.41 |
Energy contribution | -9.75 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.20 |
Mean z-score | -2.43 |
Structure conservation index | 0.42 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.731129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3592953 99 + 27905053 AUUUGAACUUGCAUUCUCAGCCGUUUUGCAGGCAACUCAAACA--------GAAUGUCGGAAAAUAUUCCAA---CAA---------UUUGCUGAAC-AUGUGAAAUUUAAAAAACUCCU .((((((.(..(((..(((((.((((.(.((....)))))))(--------((.(((.((((....)))).)---)).---------))))))))..-)))..)..))))))........ ( -22.00) >DroSec_CAF1 43200 99 + 1 AUUUGAACUUGCAUUCUCAGCCGUUUUGCAGGCAACUCAAACA--------GAAUGCCGGAAAAUAUUCCAA---CAU---------UUUGCUGAAC-AUGUGAAAUUUAAAAAACUCCU .((((((.(..(((..(((((.((((.(.((....)))))))(--------(((((..((((....))))..---)))---------))))))))..-)))..)..))))))........ ( -23.10) >DroSim_CAF1 44054 99 + 1 AUUUGAACUUGCAUUCUCAGCCGUUUUGCAGGCAACUCAAACA--------GAAUGCCGGAAAAUAUUCCAA---CAU---------UUUGCUGAAC-AUGUGAAAUUUAAAAAACUCCU .((((((.(..(((..(((((.((((.(.((....)))))))(--------(((((..((((....))))..---)))---------))))))))..-)))..)..))))))........ ( -23.10) >DroEre_CAF1 49787 100 + 1 AUUUGAACUUGCCAUUUCAGCCGU-UUGCAGGCAACUCAAACA--------GAAUGCCUGAAAAUACUCCAAAAACAU---------UUUGCUGAAC-AUGGGAAAUU-UAAAAACUCCU .((((((.((.((((((((((.((-(((.((....)))))))(--------(((((...................)))---------))))))))).-)))).)).))-))))....... ( -25.01) >DroYak_CAF1 66838 110 + 1 AUUCGAACUUGCAUUCUCAGCCGUUUUGCAGGCAACUCAAACA--------GAAUGCCUGAAAAUAUUCCAAAAACAUUUUCAGCAUUUUGCUGAAC-AUGGCGACUU-AAAAAACUCCU ........(((((((.((((.(((((((.((....))....))--------))))).)))).)))..........(((.((((((.....)))))).-)))))))...-........... ( -25.80) >DroAna_CAF1 38889 110 + 1 AGCCGAAGUUGCAUUCUCAGCCAUUUUGUUAGCAAGUCAAACAUUUUAAAAGCAUUUUUGGACAAAAGCGAAAAAC-U---------CUUGCUGGACGAUGGAAUAUUUUUACUAUCCCA .(((((((.(((.............(((....)))(.....).........))).)))))).)...(((((.....-.---------.)))))((..(((((((.....)).))))))). ( -15.50) >consensus AUUUGAACUUGCAUUCUCAGCCGUUUUGCAGGCAACUCAAACA________GAAUGCCGGAAAAUAUUCCAA___CAU_________UUUGCUGAAC_AUGGGAAAUUUAAAAAACUCCU ........(..(((..(((((...((((.((....))))))..........(((((........))))).....................)))))...)))..)................ ( -9.41 = -9.75 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:18 2006