Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,579,330 – 3,579,423 |
Length | 93 |
Max. P | 0.626447 |
Location | 3,579,330 – 3,579,423 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 87.88 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -27.84 |
Energy contribution | -29.28 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.19 |
Mean z-score | -1.55 |
Structure conservation index | 0.79 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3579330 93 + 27905053 GCGUCGACUGAGAAAUCCGAGCGCUGCUCCCGAGAGCUCCCGAAAGGACCACGACUCCGACGAAGGCACUUCGGCCCCCGGAGCUUUCGUUCU ..((((...(((...((.((((...))))..))...)))((....))....))))...(((((((((..(((((...)))))))))))))).. ( -31.40) >DroSec_CAF1 30245 92 + 1 GCGUCGACUGAGAAAUCCGAGCGCUGCUC-CGAGUGCUCUCGAAAGGACUCCGACGCAGACGAAGGCACUUCGGCUCCGGAAGCUUUCGUUCU ((((((...(((......(((((((....-..)))))))((....)).))))))))).(((((((((..((((....)))).))))))))).. ( -39.70) >DroSim_CAF1 30727 92 + 1 GCGUCGACUGAGAAAUCCGAGCGCUGCUC-CGAGUGCUCCCGAAAGGACUCCGACUCAGACGAAGGCACUUCGGCUCCGGAAGCUUUCGUUCU (.((((...(((......(((((((....-..)))))))((....)).))))))).).(((((((((..((((....)))).))))))))).. ( -36.30) >DroEre_CAF1 35603 92 + 1 GCGUCGAGUGAGAAAUCCGAGCGCUGCUC-CGAGCGCUCCCGAGAGGACUCUCUCGCAAACGAAGGCACUUCGGUCCCGGGAGCUUUCGUUCU ..(.((((.(((......(((((((....-..)))))))((....)).))).))))).(((((((((.((.((....)))).))))))))).. ( -39.70) >DroYak_CAF1 22482 91 + 1 GCGUCGACUGAGAAAUCCGAGAGCGGCAC-CGAGUGCUUCCGAAAGGACUCUC-CGCAAACGAAGGCACUUCGGCAUCGGGAGCUUUAGUUCU .....(((((((...((((((((.(((((-...)))))(((....))))))))-((....(((((...)))))....)))))..))))))).. ( -29.40) >consensus GCGUCGACUGAGAAAUCCGAGCGCUGCUC_CGAGUGCUCCCGAAAGGACUCCGACGCAGACGAAGGCACUUCGGCCCCGGGAGCUUUCGUUCU ((((((...(((......(((((((.......)))))))((....)).))))))))).(((((((((..((((....)))).))))))))).. (-27.84 = -29.28 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:12 2006