Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,578,439 – 3,578,571 |
Length | 132 |
Max. P | 0.999936 |
Location | 3,578,439 – 3,578,533 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 97.66 |
Mean single sequence MFE | -33.14 |
Consensus MFE | -31.84 |
Energy contribution | -31.72 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -3.22 |
Structure conservation index | 0.96 |
SVM decision value | 4.67 |
SVM RNA-class probability | 0.999936 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3578439 94 + 27905053 GAAACGAACCUGCACGUGGCUAACAAAACUGUUGGCCACUUUUUAGCAGAAAAGCGGUAAAUUUAUGGCUGUUGCUGGCAGCAUUUGCGUGCCA ...........((((((((((((((....))))))))))......(((((..(((.(((....))).)))((((....)))).))))))))).. ( -35.00) >DroSec_CAF1 29374 94 + 1 GAAACAAACCUGCACGUGGCUAACAAAACUGCUGGCCACUUUUUAGCAGAAAAGCGGCAAAUUUAUGGCUGUUGCUGGCAGCAUUUGCGUGCCA .........((((..(((((((.((....)).)))))))......))))...(((((((..........)))))))((((((....)).)))). ( -29.60) >DroSim_CAF1 29856 94 + 1 GAAACAAACCUGCACGUGGCUAACAAAACUGUUGGCCACUUUUUAGCAGAAAAGCGGCAAAUUUAUGGCUGUUGCUGGCAGCAUUUGCGUGCCA .........((((..((((((((((....))))))))))......))))...(((((((..........)))))))((((((....)).)))). ( -33.80) >DroEre_CAF1 34731 94 + 1 GAAACGAACCUGCACGUGGCUAACAAAACUGUUGGCCACUUUUUAGCAGAAAAGCGGCAAAUUUAUGACUGUUGCUGGCAGCAUUUGCGUGCCA .........((((..((((((((((....))))))))))......))))...(((((((..........)))))))((((((....)).)))). ( -33.80) >DroYak_CAF1 21609 94 + 1 GAAACGAACCUGCACGUGGCUAACAAAACUGUUGGCCACUUUUUAGCAGAAAAGCGGCAAAUUUAUGGCUGUUGUUGGCAGCAUUUGCGUGCCA ..(((....((((..((((((((((....))))))))))......))))...((((((.........)))))))))((((((....)).)))). ( -33.50) >consensus GAAACGAACCUGCACGUGGCUAACAAAACUGUUGGCCACUUUUUAGCAGAAAAGCGGCAAAUUUAUGGCUGUUGCUGGCAGCAUUUGCGUGCCA .........((((..((((((((((....))))))))))......))))...(((((((..........)))))))((((((....)).)))). (-31.84 = -31.72 + -0.12)
Location | 3,578,439 – 3,578,533 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 97.66 |
Mean single sequence MFE | -28.94 |
Consensus MFE | -26.68 |
Energy contribution | -26.36 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -2.37 |
Structure conservation index | 0.92 |
SVM decision value | 3.20 |
SVM RNA-class probability | 0.998730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3578439 94 - 27905053 UGGCACGCAAAUGCUGCCAGCAACAGCCAUAAAUUUACCGCUUUUCUGCUAAAAAGUGGCCAACAGUUUUGUUAGCCACGUGCAGGUUCGUUUC (((((.((....)))))))..(((((((...........((......))......(((((.(((......))).))))).....)))).))).. ( -26.90) >DroSec_CAF1 29374 94 - 1 UGGCACGCAAAUGCUGCCAGCAACAGCCAUAAAUUUGCCGCUUUUCUGCUAAAAAGUGGCCAGCAGUUUUGUUAGCCACGUGCAGGUUUGUUUC (((((.((....)))))))((....)).(((((((((((((......))......(((((.(((......))).)))))).))))))))))... ( -31.20) >DroSim_CAF1 29856 94 - 1 UGGCACGCAAAUGCUGCCAGCAACAGCCAUAAAUUUGCCGCUUUUCUGCUAAAAAGUGGCCAACAGUUUUGUUAGCCACGUGCAGGUUUGUUUC (((((.((....)))))))((....)).(((((((((((((......))......(((((.(((......))).)))))).))))))))))... ( -31.20) >DroEre_CAF1 34731 94 - 1 UGGCACGCAAAUGCUGCCAGCAACAGUCAUAAAUUUGCCGCUUUUCUGCUAAAAAGUGGCCAACAGUUUUGUUAGCCACGUGCAGGUUCGUUUC (((((.((....))))))).........(..((((((((((......))......(((((.(((......))).)))))).)))))))..)... ( -27.70) >DroYak_CAF1 21609 94 - 1 UGGCACGCAAAUGCUGCCAACAACAGCCAUAAAUUUGCCGCUUUUCUGCUAAAAAGUGGCCAACAGUUUUGUUAGCCACGUGCAGGUUCGUUUC (((((.((....))))))).........(..((((((((((......))......(((((.(((......))).)))))).)))))))..)... ( -27.70) >consensus UGGCACGCAAAUGCUGCCAGCAACAGCCAUAAAUUUGCCGCUUUUCUGCUAAAAAGUGGCCAACAGUUUUGUUAGCCACGUGCAGGUUCGUUUC (((((.((....)))))))...........((((..(((((......))......(((((.(((......))).))))).....)))..)))). (-26.68 = -26.36 + -0.32)
Location | 3,578,453 – 3,578,571 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.84 |
Mean single sequence MFE | -43.30 |
Consensus MFE | -34.56 |
Energy contribution | -35.45 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.17 |
Mean z-score | -3.56 |
Structure conservation index | 0.80 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3578453 118 + 27905053 CGUGGCUAACAAAACUGUUGGCCACUUUUUAGCAGAAAAGCGGUAAAUUUAUGGCUGUUGCUGGCAGCAUUUGCGUGCCAGCAACUUUUUGGGC-ACUC-CUCCACCUGGAAAAAGACGA .((((((((((....))))))))))((((((((((((((((.(((....))).)))((((((((((((....)).))))))))))))))))((.-....-..))..)))))))....... ( -46.70) >DroSec_CAF1 29388 118 + 1 CGUGGCUAACAAAACUGCUGGCCACUUUUUAGCAGAAAAGCGGCAAAUUUAUGGCUGUUGCUGGCAGCAUUUGCGUGCCAGCAACUUUUUGGCC-ACUC-CUCCACCUGGAAAAAGACGA .((((((((...........(((.((((((....)))))).)))............((((((((((((....)).))))))))))...))))))-))..-.(((....)))......... ( -44.90) >DroSim_CAF1 29870 118 + 1 CGUGGCUAACAAAACUGUUGGCCACUUUUUAGCAGAAAAGCGGCAAAUUUAUGGCUGUUGCUGGCAGCAUUUGCGUGCCAGCAACUUUUUGGGC-ACUC-CCCCACCUGGAAAAAGACGA (((((((((((....)))))))).((((((..(((...(((.(........).)))((((((((((((....)).))))))))))....((((.-....-.)))).))).))))))))). ( -46.00) >DroEre_CAF1 34745 118 + 1 CGUGGCUAACAAAACUGUUGGCCACUUUUUAGCAGAAAAGCGGCAAAUUUAUGACUGUUGCUGGCAGCAUUUGCGUGCCAGCAACUUUUUGGGC-UCUC-CUCCACCUGGAAGAAGACGA .((((((((((....)))))))))).....(((.(((((((((((......)).)))(((((((((((....)).)))))))))))))))..))-).((-.(((....))).))...... ( -44.20) >DroYak_CAF1 21623 118 + 1 CGUGGCUAACAAAACUGUUGGCCACUUUUUAGCAGAAAAGCGGCAAAUUUAUGGCUGUUGUUGGCAGCAUUUGCGUGCCAGCAACUUUUUGGGC-ACUC-CUCCACCUGGAAAAAGACGU .((((((((((....))))))))))......((.((((((((((.........))))(((((((((((....)).)))))))))))))))..))-....-.(((....)))......... ( -42.30) >DroAna_CAF1 25208 114 + 1 CGUGGCAAACAAAACUGUUGGCCACUUUUUAGCAGAAGAACGGCAAAUUUAUGGCC------GCCAGCAUUUGCGUGUUGGCAACUUUUUUGGAUACCGGAAGCACCUGGAAAAAGAUGA .(((((.((((....)))).))))).......(((((((..(((.........)))------((((((((....))))))))...)))))))....((((......)))).......... ( -35.70) >consensus CGUGGCUAACAAAACUGUUGGCCACUUUUUAGCAGAAAAGCGGCAAAUUUAUGGCUGUUGCUGGCAGCAUUUGCGUGCCAGCAACUUUUUGGGC_ACUC_CUCCACCUGGAAAAAGACGA (((((((((((....)))))))).((((((..(((......(((.........)))((((((((((((....)).)))))))))).....................))).))))))))). (-34.56 = -35.45 + 0.89)
Location | 3,578,453 – 3,578,571 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.84 |
Mean single sequence MFE | -42.17 |
Consensus MFE | -31.19 |
Energy contribution | -32.83 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.14 |
Mean z-score | -3.48 |
Structure conservation index | 0.74 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3578453 118 - 27905053 UCGUCUUUUUCCAGGUGGAG-GAGU-GCCCAAAAAGUUGCUGGCACGCAAAUGCUGCCAGCAACAGCCAUAAAUUUACCGCUUUUCUGCUAAAAAGUGGCCAACAGUUUUGUUAGCCACG .............((..(((-((((-(........((((((((((.((....)))))))))))).....((....)).))))))))..)).....(((((.(((......))).))))). ( -42.90) >DroSec_CAF1 29388 118 - 1 UCGUCUUUUUCCAGGUGGAG-GAGU-GGCCAAAAAGUUGCUGGCACGCAAAUGCUGCCAGCAACAGCCAUAAAUUUGCCGCUUUUCUGCUAAAAAGUGGCCAGCAGUUUUGUUAGCCACG .............((..(((-((((-(((......((((((((((.((....))))))))))))....(......)))))))))))..)).....(((((.(((......))).))))). ( -49.60) >DroSim_CAF1 29870 118 - 1 UCGUCUUUUUCCAGGUGGGG-GAGU-GCCCAAAAAGUUGCUGGCACGCAAAUGCUGCCAGCAACAGCCAUAAAUUUGCCGCUUUUCUGCUAAAAAGUGGCCAACAGUUUUGUUAGCCACG .............((..(..-((((-(........((((((((((.((....)))))))))))).((.........)))))))..)..)).....(((((.(((......))).))))). ( -45.40) >DroEre_CAF1 34745 118 - 1 UCGUCUUCUUCCAGGUGGAG-GAGA-GCCCAAAAAGUUGCUGGCACGCAAAUGCUGCCAGCAACAGUCAUAAAUUUGCCGCUUUUCUGCUAAAAAGUGGCCAACAGUUUUGUUAGCCACG ..(..(((((((....))))-))).-.).......((((((((((.((....))))))))))))...............((......))......(((((.(((......))).))))). ( -44.10) >DroYak_CAF1 21623 118 - 1 ACGUCUUUUUCCAGGUGGAG-GAGU-GCCCAAAAAGUUGCUGGCACGCAAAUGCUGCCAACAACAGCCAUAAAUUUGCCGCUUUUCUGCUAAAAAGUGGCCAACAGUUUUGUUAGCCACG .............((..(((-((((-(........((((.(((((.((....))))))).)))).((.........))))))))))..)).....(((((.(((......))).))))). ( -38.80) >DroAna_CAF1 25208 114 - 1 UCAUCUUUUUCCAGGUGCUUCCGGUAUCCAAAAAAGUUGCCAACACGCAAAUGCUGGC------GGCCAUAAAUUUGCCGUUCUUCUGCUAAAAAGUGGCCAACAGUUUUGUUUGCCACG .(((((......))))).....((((..(((((..(((((((.((......)).))))------((((((......((.(.....).))......)))))))))..)))))..))))... ( -32.20) >consensus UCGUCUUUUUCCAGGUGGAG_GAGU_GCCCAAAAAGUUGCUGGCACGCAAAUGCUGCCAGCAACAGCCAUAAAUUUGCCGCUUUUCUGCUAAAAAGUGGCCAACAGUUUUGUUAGCCACG ....(((.((((....)))).)))...........((((((((((.((....))))))))))))...............((......))......(((((.(((......))).))))). (-31.19 = -32.83 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:08 2006