Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,574,098 – 3,574,218 |
Length | 120 |
Max. P | 0.582129 |
Location | 3,574,098 – 3,574,218 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.17 |
Mean single sequence MFE | -40.90 |
Consensus MFE | -34.72 |
Energy contribution | -34.87 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.18 |
Mean z-score | -1.60 |
Structure conservation index | 0.85 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3574098 120 - 27905053 AAUGGAGCCGAGAUUGUCUUUAAUCCCUCGGCUACGAUCGGCCGCCUAUCGGAGCCAUUGUGGAGCAUUGAGGCACGUAACGCUGCCAUCGCCAAUAGCUACUUUACGGUUCCGAUUAAU ...((.((((((((((....)))))..(((....))))))))..)).(((((((((...((((((....((((((((...)).)))).))((.....))..))))))))))))))).... ( -38.70) >DroSec_CAF1 25062 120 - 1 AAUGGAGCCGAGAUUGUCUUCAAUCCCUCGGCUACGAUCGGUCGGCUAUCGGAGCCAUUGUGGAGCAUUGAGGCACGUAAUGCUGCCAUCGCCAAUAGCUACUUCACGGUUCCGAUUAAU .....(((((((((((....)))))(((((....)))..))))))))(((((((((...((((((....((((((.(.....))))).))((.....))..))))))))))))))).... ( -42.50) >DroSim_CAF1 25432 120 - 1 AAUGGAGCCGAGAUUGUGUUCAAUCCCUCGGCUACGAUCGGUCGGCUAUCGGAGCCAUUGUGGAGCAUUGAGGCACGUAAUGCUGCCAUCGCCAAUAGCUACUUCACGGUUCCGAUUAAU .....(((((((((((((..(........)..)))))))..))))))(((((((((...((((((....((((((.(.....))))).))((.....))..))))))))))))))).... ( -42.60) >DroEre_CAF1 30470 120 - 1 AAUGGCGCCGAAAUUGUCUUCAAUCCCUCGGCUACGAUCGGUCGGCUAUCGGAGCCCCUGUGGGGCAUUGAGGCACGUAAUGCUGCCAUCGCCAACAGCUACUUCACGGUGCCGAUUAAU ..((((((((.....(((((((((((((.((((.((((.((....)))))).)))).....)))).))))))).))(((..((((..........)))))))....))))))))...... ( -43.00) >DroYak_CAF1 17408 120 - 1 AAUGGAGCCGAGAUAGUCUUCAAUCCGUCGGCUACGAUCGGUCGGCUAUCAGAGCCACUGUGGGGCAUUGAGGCACGUAACGCUGCCAUCGCAAAUAGCUACUUCACGGUUCCGAUCAAU .....(((((((((........)))..))))))..((((((..((((.....))))(((((((((....((((((((...)).)))).))((.....))..))))))))).))))))... ( -42.20) >DroAna_CAF1 20649 120 - 1 AAUGGAGCCGAGAUUGUCUUCAAUCCCUCGGCUACUAUAGGACGCCUCUCGGAGCCACUUUGGAGCAUUGAGGCAAGGAAUGCUGCGAUCGCCAAUAGUUACUUUACGGUUCCCAUAAAU .(((((((((((((((....)))))..)))))).))))............((((((...((((.(.((((.((((.....)))).))))).))))..((......))))))))....... ( -36.40) >consensus AAUGGAGCCGAGAUUGUCUUCAAUCCCUCGGCUACGAUCGGUCGGCUAUCGGAGCCACUGUGGAGCAUUGAGGCACGUAAUGCUGCCAUCGCCAAUAGCUACUUCACGGUUCCGAUUAAU ...(.(((((((((((....)))))..)))))).)((((((..((((.....))))(((((((((....((((((.(.....))))).))((.....))..))))))))).))))))... (-34.72 = -34.87 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:04 2006