Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,572,428 – 3,572,531 |
Length | 103 |
Max. P | 0.767911 |
Location | 3,572,428 – 3,572,531 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.80 |
Mean single sequence MFE | -23.97 |
Consensus MFE | -21.04 |
Energy contribution | -21.08 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.42 |
Structure conservation index | 0.88 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3572428 103 - 27905053 -----------------GAAAACUGAUUCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUCCGGGGAAAGCCAAAUAAAACCCAAAGUGACAGAGGUCCUU -----------------............((((((((..(..(...........((((((((.......))))))))....(((...............)))...)..)..)))).)))) ( -23.36) >DroSec_CAF1 23388 103 - 1 -----------------GAAAACUGAUUCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUCCGGGGAAAGCCAAAUAAAACCCAAAGUGACAGAGGUCCUU -----------------............((((((((..(..(...........((((((((.......))))))))....(((...............)))...)..)..)))).)))) ( -23.36) >DroSim_CAF1 23747 103 - 1 -----------------GAAAACUGAUUCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUCCGGGGAAAGCCAAAUAAAACCCAAAGUGACAGAGGUCCUU -----------------............((((((((..(..(...........((((((((.......))))))))....(((...............)))...)..)..)))).)))) ( -23.36) >DroEre_CAF1 28786 103 - 1 -----------------GAAAACUGAUUCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUCCGGGGAAAGCCAAAUAAAACCCAAAGUGACAGAGGUCCUU -----------------............((((((((..(..(...........((((((((.......))))))))....(((...............)))...)..)..)))).)))) ( -23.36) >DroAna_CAF1 19036 119 - 1 CACACACAAAACAGGACGAGA-AAGAUCCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUUCGAGGAAAGCCAAAUAAAAUCCAAUGUGACAGAGGUCUCU .............((((....-..).))).(((((((..(..((((......((((((((((.......))))))....))))(((.............)))))))..)..))))))).. ( -26.42) >consensus _________________GAAAACUGAUUCAAGGCCUCGAUUGCAUUACCCAUUCGACAUGUUGCUAAUAAAUAUGUUUUCCGGGGAAAGCCAAAUAAAACCCAAAGUGACAGAGGUCCUU ...............................((((((..(..(...........((((((((.......))))))))....(((...............)))...)..)..))))))... (-21.04 = -21.08 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:03 2006