Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,572,271 – 3,572,390 |
Length | 119 |
Max. P | 0.546455 |
Location | 3,572,271 – 3,572,390 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.27 |
Mean single sequence MFE | -34.68 |
Consensus MFE | -26.72 |
Energy contribution | -26.80 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.30 |
Mean z-score | -1.49 |
Structure conservation index | 0.77 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3572271 119 + 27905053 GAGCGUGCCGACGGUUGA-GAAUUUAUCUUGGGCUUAAUCAAUCAACCCGGGCACUGAAUAAAAUAUGUUCGACUGGUCGAGGAUAACCCACGGCCAUAAACGAGCAGCUCCCACAUUUU (((((((((...((((((-....(((.........)))....))))))..)))))...........((((((..((((((.((.....)).))))))....))))))))))......... ( -39.60) >DroSec_CAF1 23231 119 + 1 GAGCGCGUCGACGGUUGG-GAAUUUAUCUUGGGCUUAAUCAAUCAACCCGGGCACUGAAUAAAAUAUGUUCGACUGGUCGAGGGUAACCCACGGCUAUAAACGAGCAGCUCCCACAUUUU ((((((.(((..((((((-....(((.........)))....))))))))))).............((((((..((((((.(((...))).))))))....))))))))))......... ( -32.70) >DroSim_CAF1 23590 119 + 1 GAGCGCGCCGACGGUUGG-GAAUUUAUCUUGGGCUUAAUCAAUCAACCCGGGCACUGAAUAAAAUAUGUUCGACUGGUCGAGGAUAACCCACGGCCAUAAACGAGCAGCUCCCACAUUUU ((((((.(((..((((((-....(((.........)))....))))))))))).............((((((..((((((.((.....)).))))))....))))))))))......... ( -36.30) >DroEre_CAF1 28629 119 + 1 GAGCGUGCCGACGGUUGG-GAAUUUAUCUUGGGCUUAAUCAAUCAACCCGGGCACUGAAUAAAAUAUGUUCGACUGGCCGAGGAUAACCCACGGCCAUAAACGAGCAGCUCCCACAUUUU (((((((((...((((((-....(((.........)))....))))))..)))))...........((((((..((((((.((.....)).))))))....))))))))))......... ( -41.40) >DroAna_CAF1 18876 120 + 1 GAAUAUGUCGAUGCUGGGAGAAUUUAUCUUGAGCUUAAUCAAUCAACCCUAGCACUGAAUAAAAUAUCUCUGUCUGACGAAAAAUAUCUUAAGGCUAUAAAGGGGAAGCUCCGACAUUUU ....((((((.((((((((((.....)))(((......)))......)))))))............(((((((((...((......))...))))......))))).....))))))... ( -23.40) >consensus GAGCGUGCCGACGGUUGG_GAAUUUAUCUUGGGCUUAAUCAAUCAACCCGGGCACUGAAUAAAAUAUGUUCGACUGGUCGAGGAUAACCCACGGCCAUAAACGAGCAGCUCCCACAUUUU (((((((((...((((((..........((((......))))))))))..)))))...........((((((..((((((.((.....)).))))))....))))))))))......... (-26.72 = -26.80 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:02 2006