Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,571,947 – 3,572,154 |
Length | 207 |
Max. P | 0.701982 |
Location | 3,571,947 – 3,572,056 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 86.65 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -17.64 |
Energy contribution | -17.60 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.13 |
Mean z-score | -1.73 |
Structure conservation index | 0.76 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3571947 109 + 27905053 AUCGCACACACUUAACGAGCACUUAAGCGUCUUCGCUUGGAGCUGCUUAGCUCGAAAUAUUAUGUUUAAUUAAAUAUGAGCUCAUAAUCGAGUUCUCCCAUUAAAC-CUG ...............(((((...((((((.((((....)))).))))))))))).........(((((((.......((((((......))))))....)))))))-... ( -26.70) >DroSec_CAF1 22907 109 + 1 AUCGCACACACUUAACGAGCACUUAAGCGUCUUCGCUCGGAGCUGCUUAGCUCGAAAUAUUAUGUUUAAUUAAAUAUGAGCUCAUAAUCGGGUUCCCCCAUUAAGC-CUG ...((..........(((((...((((((.((((....)))).))))))))))).....((((((((....))))))))))...((((.(((....)))))))...-... ( -27.00) >DroSim_CAF1 23266 109 + 1 AUCGCACACACUUAACGAGCACUUAAGCGUCUUCGCUCGGAGCUGCUUAGCUCGAAAUAUUAUGUUUAAUUAAAUAUGAGCUCAUAAUCGGGUUCCUCCAUUAAGC-CUG ...((..........(((((...((((((.((((....)))).))))))))))).....((((((((....)))))))))).......((((((.........)))-))) ( -26.60) >DroEre_CAF1 28306 108 + 1 AUCGCACACACUUAACUAGCACUUAAGCGUCUUCGCUCGGAGCUGCUUAGCUCUAAAUAUUAUGUUUAAUUAAAUAUGAGCUCAUAAUCGAGUUGC-CCAUUAAAC-CUG ...(((...((((.....((......))......((((((((((....)))))).......((((((....))))))))))........)))))))-.........-... ( -19.60) >DroAna_CAF1 18565 95 + 1 -------ACACUUAACGAGCUCUUAAACGUCUCC----UGAGCUGUUUAGCUCUAAAUAUUACAUUUAAUUAAAUAUGAGCUCAUAAUCGCUU-CUCC---UAACCCCGG -------.........((((((............----.(((((....)))))(((((.....))))).........))))))..........-....---......... ( -16.10) >consensus AUCGCACACACUUAACGAGCACUUAAGCGUCUUCGCUCGGAGCUGCUUAGCUCGAAAUAUUAUGUUUAAUUAAAUAUGAGCUCAUAAUCGAGUUCCCCCAUUAAAC_CUG ................((((..(((((((.((((....)))).))))))).........((((((((....))))))))))))........................... (-17.64 = -17.60 + -0.04)
Location | 3,572,056 – 3,572,154 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.14 |
Mean single sequence MFE | -22.36 |
Consensus MFE | -15.07 |
Energy contribution | -15.35 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -2.22 |
Structure conservation index | 0.67 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638515 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3572056 98 + 27905053 CUGA-------CCAGCUGGCCUAUCU---GCCAUUUUAUAGCCACUUUAUCUGUUUAAUUAAAAGCCUGGCUUUUAAUUGAAAUCGCUCUGAUAUCUAAGCUGUCACA .(((-------(.(((((((......---)))...(((.(((...........(((((((((((((...)))))))))))))...))).)))......)))))))).. ( -23.24) >DroSec_CAF1 23016 98 + 1 CUGA-------CCAGCUGGCCUAUCU---GCCAUUUUAUAGCCACUUUAUCUGUUUAAUUAAAAGCCUGGCUUUUAAUUGAAAUCGCUCUGAUAUCUGAGCUGUCACA .(((-------(.(((((((......---)))..........((...((((.((((((((((((((...))))))))))))....))...))))..)))))))))).. ( -23.40) >DroSim_CAF1 23375 98 + 1 CUGA-------CCAGCUGGCCUAUCU---GCCAUUUUAUAGCCACUUUAUCUGUUUAAUUAAAAGCCUGGCUUUUAAUUGAAAUCGCUCUGAUAUCUGAGCUGUCACA .(((-------(.(((((((......---)))..........((...((((.((((((((((((((...))))))))))))....))...))))..)))))))))).. ( -23.40) >DroEre_CAF1 28414 98 + 1 CUGA-------CCAGCUUGCCUAUCU---CCCACUUUAUAGCCACUUUAUCUGUUUAAUUAAAAGGCUGGCUUUUAAUUGAAAUCGCUCUGAUAUCUGAGCUGUCACA .(((-------(.((((((..((((.---....((....))............((((((((((((.....))))))))))))........))))..)))))))))).. ( -19.60) >DroAna_CAF1 18660 108 + 1 CUUGUCAGCUGCCGGCUGGCUUUCCUCUAUCCAUUUCAUAGCCACCUUAUCUGCUUAAUUAAAUGGUUGGCCUUUAAUUGAAAUCGCUCCGAUAUCUGACCUGUCACA ...(((((.....((.(((((..................))))))).((((.(((((((((((.((....)))))))))))....))...)))).)))))........ ( -22.17) >consensus CUGA_______CCAGCUGGCCUAUCU___GCCAUUUUAUAGCCACUUUAUCUGUUUAAUUAAAAGCCUGGCUUUUAAUUGAAAUCGCUCUGAUAUCUGAGCUGUCACA ............((((((((....................)))....((((.(((((((((((((.....)))))))))))....))...))))....)))))..... (-15.07 = -15.35 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:01 2006