Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,570,972 – 3,571,068 |
Length | 96 |
Max. P | 0.926170 |
Location | 3,570,972 – 3,571,068 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 87.96 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -28.48 |
Energy contribution | -28.20 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.15 |
Mean z-score | -1.78 |
Structure conservation index | 0.87 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.926170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3570972 96 - 27905053 GCAGC--------------AAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGGUGCUCCGAGUGAAAUGCUUUGGUGCUGCUGAUGGUGGCGAUGGCAAUGGCA ((.((--------------(...((....))....)))..(((((..((.(((..(..((((.((((((.....)).)))).)).))..)..))).)).)))))...)). ( -31.50) >DroSec_CAF1 21991 96 - 1 GCAGC--------------AAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGGUGCUCCAAGUGAAAUGCUUUGGUGCUGCUGAUGGUGGCGAUGGCAAUGGCA ((.((--------------(...((....))....)))..(((((..((.(((..(..((((.((((((.....)).)))).)).))..)..))).)).)))))...)). ( -31.80) >DroSim_CAF1 22306 96 - 1 GCAGC--------------AAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGGUGCUCCAAGUGAAAUGCUUUGGUGCUGCUGAUGGUGGCGAUGGCAAUGGCA ((.((--------------(...((....))....)))..(((((..((.(((..(..((((.((((((.....)).)))).)).))..)..))).)).)))))...)). ( -31.80) >DroEre_CAF1 27311 109 - 1 GCAGCAGGCAUG-GCGAGGAAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGCUGCGCCGAGUGAAAUGCUUUGGGCCUGGUGAUGGUGGCGAUGGCGAUGGCG ((.((.(((((.-(((.......((....))....))).)))))..))(.((((((..((((((((.((..((....))..)).))))).)))..)))))).)....)). ( -37.00) >DroYak_CAF1 14738 110 - 1 GCAGCAGGCACGGGCGAGGAAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGGUGCUCCGAGUGAAAUGCUUUGGGGCUGGAGAUGGUGGCGAUGGCAAUGGCG ((.(((....(...(.((.....)).)...)....)))..(((((..((.(((..((...(((((((((.....)).)))))))....))..))).)).)))))...)). ( -32.30) >consensus GCAGC______________AAAAUUGGAAAGGAAAUGUGAUGCCGGGCGGCAUUGUUGGUGCUCCGAGUGAAAUGCUUUGGUGCUGCUGAUGGUGGCGAUGGCAAUGGCA ...................................(((.((((((..((.(((..(((((((.((((((.....)).)))).)).)))))..))).)).))))).).))) (-28.48 = -28.20 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:59 2006