| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,570,507 – 3,570,627 |
| Length | 120 |
| Max. P | 0.928257 |
| Location | 3,570,507 – 3,570,627 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.94 |
| Mean single sequence MFE | -37.95 |
| Consensus MFE | -32.25 |
| Energy contribution | -32.75 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3570507 120 - 27905053 ACUCGCAGAUAACUGGCAAUGAAAGUGGGCUGCUCCGGAGGGAGGUGUCCUGUUGUGCCAGGACAAUGCAGAUAGGCGUUGGGGAUAAUAAAAUAUUAUGCAUCUGGGAGAGGGAACGAG .(((.(((((..((((((....((..((((..((((....))))..))))..)).))))))..((((((......)))))).(.((((((...)))))).)))))).))).(....)... ( -42.00) >DroSec_CAF1 21524 120 - 1 ACUCGCAGAUAACUGGCAAUGAAAGUGGGGUGCUCUGGAGGGAGGGGUCCUGUUGUGCCAGGACAAUGCAGAUAGGCGUUGGGGAUAAUAAAAUAUUAUGCAACUGGGAGUGGGGACGAG ((((.(((....((((((....((..(((.(.((((....)))).).)))..)).))))))..((((((......)))))).(.((((((...)))))).)..))).))))(....)... ( -39.30) >DroSim_CAF1 21839 120 - 1 ACUCGCAGAUAACUGGCAAUGAAAGUGGGCUGCUCCGGAGGGAGGUGUCCUGUUGUGCCAGGACAAUGCAGAUAGGCGUUGGGGAUAAUAAAAUAUUAUGCAACUGGGAGUGGGGGCGAG ((((.(((....((((((....((..((((..((((....))))..))))..)).))))))..((((((......)))))).(.((((((...)))))).)..))).))))......... ( -40.20) >DroEre_CAF1 26850 117 - 1 ACUCGCAGAUAACUGGCAAUGAAAGUGGGCUGCUCCGGAGGGAGGUGUCCUGUUGUGUCAGGACAAUGCAGAUAGGCGUUGGGGAUAAUAAAAUAUUAUGCAGCUGGGAGCGGAGAC--- .(((.(((....((((((....((..((((..((((....))))..))))..)).))))))..((((((......)))))).(.((((((...)))))).)..))).))).(....)--- ( -35.80) >DroYak_CAF1 14292 120 - 1 ACUCGCAGAUAACUGGCAAUGAAAGUGGGCUGCUCCAGAGGGAGAAGUCCUGUUGAGCCAGGACAAUGCAGAUAGGCGUUGGGGAUAAUAAAAUAUUAUGCAACUGGGAGCUAAGACAGG .(((.(((....(((((.((....))(((((.((((....)))).)))))......)))))..((((((......)))))).(.((((((...)))))).)..))).))).......... ( -39.30) >DroAna_CAF1 17306 120 - 1 UCUUGCAGAUAACUGGCAAUGAGAGUGGGCGGGGAGCGGAGGCGGUGUCCUGCAGUGCCAGGACAAUGCAGAUAGGCGUUUGGGAUAAUAAAAUAUUAUGCAACUGGGACUGGGAAAGCG ((((((((...((((.(.((....))..((.....))...).))))...))))(((.((((..((((((......))).)))(.((((((...)))))).)..)))).)))))))..... ( -31.10) >consensus ACUCGCAGAUAACUGGCAAUGAAAGUGGGCUGCUCCGGAGGGAGGUGUCCUGUUGUGCCAGGACAAUGCAGAUAGGCGUUGGGGAUAAUAAAAUAUUAUGCAACUGGGAGUGGGGACGAG .(((.(((....((((((........((((..((((....))))..)))).....))))))..((((((......)))))).(.((((((...)))))).)..))).))).......... (-32.25 = -32.75 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:58 2006