Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,569,202 – 3,569,311 |
Length | 109 |
Max. P | 0.718019 |
Location | 3,569,202 – 3,569,311 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 93.24 |
Mean single sequence MFE | -22.24 |
Consensus MFE | -18.50 |
Energy contribution | -18.58 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.31 |
Structure conservation index | 0.83 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3569202 109 + 27905053 AAAAAUCAAGCUCAACUCAUUUUACAGCCCCAUAAGGAGAAAGUCCGACCAGGUCAGAGCGUUGACCGCACCCUUUCCCUAGCGAAACCCACUU-UCCUCGAUUUUCCCU .((((((..(((.............))).......(..((((((.......((((((....))))))((............)).......))))-))..))))))).... ( -17.92) >DroSec_CAF1 20178 109 + 1 AAAAAUCAAGCUCAACUCAUGUUACAGCCCCAUAAGGAGAAAGUCCGAGCAGGUCAGAGCGUUGACCGCACCCUUUCCCUAGCGAAACCCACUU-UCCUCGAUUUUUCCU (((((((..(((.(((....)))..))).......(..((((((....((.((((((....))))))))....((((......))))...))))-))..))))))))... ( -22.60) >DroSim_CAF1 20487 109 + 1 AAAAAUCAAGCUCAACUCAUGUUACAGCCCCAUAAGGAGAAAGUCCGAGCAGGUCAGAGCGUUGACCGCACCCUUUCCCUAGCGAAACCCACUU-UCCUCGAUUUUUCCU (((((((..(((.(((....)))..))).......(..((((((....((.((((((....))))))))....((((......))))...))))-))..))))))))... ( -22.60) >DroEre_CAF1 25578 109 + 1 AAAAAUCAAGCUGAACUCAAGUAACAGCCCCUUAAGGAGAAAGUCCGAGCAGGUCAGAGCGUUGACCGCACCCUUUCCCUACCGAACCCCACUU-UUCUCGAUUUUUCCU (((((((..((((.((....))..))))......(((.(((((...(.((.((((((....)))))))).).))))))))..............-.....)))))))... ( -23.70) >DroYak_CAF1 12920 110 + 1 AAAAAUCAAGCUGAACUCAUUUAACAGCCCCAUAAGGAGAAAGUCCGUGUAGGUCAGAUCGUUGACCGCAUCCUUUCCCUACCAAAACCCACUUUUUCUCGAUUUUUCCU (((((((..((((...........))))......(((.(((((...((((.((((((....)))))))))).))))))))....................)))))))... ( -24.40) >consensus AAAAAUCAAGCUCAACUCAUGUUACAGCCCCAUAAGGAGAAAGUCCGAGCAGGUCAGAGCGUUGACCGCACCCUUUCCCUAGCGAAACCCACUU_UCCUCGAUUUUUCCU (((((((..(((.............)))......(((.(((((...(.((.((((((....)))))))).).))))))))....................)))))))... (-18.50 = -18.58 + 0.08)
Location | 3,569,202 – 3,569,311 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 93.24 |
Mean single sequence MFE | -33.70 |
Consensus MFE | -28.18 |
Energy contribution | -28.78 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.11 |
Mean z-score | -1.42 |
Structure conservation index | 0.84 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3569202 109 - 27905053 AGGGAAAAUCGAGGA-AAGUGGGUUUCGCUAGGGAAAGGGUGCGGUCAACGCUCUGACCUGGUCGGACUUUCUCCUUAUGGGGCUGUAAAAUGAGUUGAGCUUGAUUUUU ...((((((((((((-....(((((..((((((...((((((.......))))))..))))))..)))))..)))))...(((((.(((......))))))))))))))) ( -33.50) >DroSec_CAF1 20178 109 - 1 AGGAAAAAUCGAGGA-AAGUGGGUUUCGCUAGGGAAAGGGUGCGGUCAACGCUCUGACCUGCUCGGACUUUCUCCUUAUGGGGCUGUAACAUGAGUUGAGCUUGAUUUUU ...((((((((((..-.....(((..((..((((((((.(.(((((((......))))).)).)...))))).)))..))..))).((((....))))..)))))))))) ( -34.60) >DroSim_CAF1 20487 109 - 1 AGGAAAAAUCGAGGA-AAGUGGGUUUCGCUAGGGAAAGGGUGCGGUCAACGCUCUGACCUGCUCGGACUUUCUCCUUAUGGGGCUGUAACAUGAGUUGAGCUUGAUUUUU ...((((((((((..-.....(((..((..((((((((.(.(((((((......))))).)).)...))))).)))..))..))).((((....))))..)))))))))) ( -34.60) >DroEre_CAF1 25578 109 - 1 AGGAAAAAUCGAGAA-AAGUGGGGUUCGGUAGGGAAAGGGUGCGGUCAACGCUCUGACCUGCUCGGACUUUCUCCUUAAGGGGCUGUUACUUGAGUUCAGCUUGAUUUUU ...((((((((((((-......(((((((((((...((((((.......))))))..))))).)))))))))))......((((((..((....)).))))))))))))) ( -36.60) >DroYak_CAF1 12920 110 - 1 AGGAAAAAUCGAGAAAAAGUGGGUUUUGGUAGGGAAAGGAUGCGGUCAACGAUCUGACCUACACGGACUUUCUCCUUAUGGGGCUGUUAAAUGAGUUCAGCUUGAUUUUU ...((((((((((...............(((((....((((.((.....))))))..)))))..((((((.((((....)))).........))))))..)))))))))) ( -29.20) >consensus AGGAAAAAUCGAGGA_AAGUGGGUUUCGCUAGGGAAAGGGUGCGGUCAACGCUCUGACCUGCUCGGACUUUCUCCUUAUGGGGCUGUAACAUGAGUUGAGCUUGAUUUUU ...((((((((((....((..(((((.((((((...((((((.......))))))..)))))).)))))..)).((((((.........)))))).....)))))))))) (-28.18 = -28.78 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:57 2006