Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,568,074 – 3,568,171 |
Length | 97 |
Max. P | 0.932254 |
Location | 3,568,074 – 3,568,171 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.25 |
Mean single sequence MFE | -37.20 |
Consensus MFE | -24.02 |
Energy contribution | -25.94 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.08 |
Mean z-score | -2.06 |
Structure conservation index | 0.65 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3568074 97 + 27905053 UGCACCACUGUUGCUUAUCCUGGUGAAAAAUGCACGAGUUGC----CCGGAAGCGGCGGCCACCAGCUGGGUUGGCCUGAACCCAGCUAAAGGGCCAACGC------------------- .((......((((((..(((.((..(............)..)----).)))))))))((((...(((((((((......)))))))))....))))...))------------------- ( -39.10) >DroSec_CAF1 19035 97 + 1 UGCACCACUGUUGCUUAUCCUGGUGAAAAAUGCACGAGUUGC----CCGGAAGCGGCGGCCACCAGCUGGGUUGGCCUGAACCCAGCUAAAGGGCCAACGC------------------- .((......((((((..(((.((..(............)..)----).)))))))))((((...(((((((((......)))))))))....))))...))------------------- ( -39.10) >DroSim_CAF1 19344 97 + 1 UGCACCACUGUUGCUUAUCCUGGUGAAAAAUGCACGAGUUGC----CCGGAAGCGGCGGCCACCAGCUGGGUUGGCCUGAACCCAGCUAAAGGGCCAACGC------------------- .((......((((((..(((.((..(............)..)----).)))))))))((((...(((((((((......)))))))))....))))...))------------------- ( -39.10) >DroEre_CAF1 24122 91 + 1 UACAGCACUGUUGCUUAUCCUGGUGAAAAAUGCACGAGUUGC-----CGGAAGCGGCGACCACCAGCUGGGUUGGCCUGAACCCAGCUAAAGGUCC------------------------ ....(((...(..((......))..)....)))..(.(((((-----((....))))))))((((((((((((......)))))))))...)))..------------------------ ( -35.00) >DroAna_CAF1 15129 113 + 1 CGCACC-CAGUU------GCUGGUGAAAAAUGCAUGAGCUCUCCAACCGGAAGCGCCAACCACCAGCUGUGUUGGCGUGAUCCCAGCCAAAGGGGUAAAAGGAGCAAAAAAUAUCAAAAG ...(((-(..((------(((((.((...........(((.(((....))))))((((((((.....)).))))))....)))))).)))..))))........................ ( -33.70) >consensus UGCACCACUGUUGCUUAUCCUGGUGAAAAAUGCACGAGUUGC____CCGGAAGCGGCGGCCACCAGCUGGGUUGGCCUGAACCCAGCUAAAGGGCCAACGC___________________ .........(((((((...((((........((....)).......)))))))))))((((...(((((((((......)))))))))....))))........................ (-24.02 = -25.94 + 1.92)
Location | 3,568,074 – 3,568,171 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.25 |
Mean single sequence MFE | -37.64 |
Consensus MFE | -22.50 |
Energy contribution | -24.58 |
Covariance contribution | 2.08 |
Combinations/Pair | 1.15 |
Mean z-score | -1.75 |
Structure conservation index | 0.60 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638419 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3568074 97 - 27905053 -------------------GCGUUGGCCCUUUAGCUGGGUUCAGGCCAACCCAGCUGGUGGCCGCCGCUUCCGG----GCAACUCGUGCAUUUUUCACCAGGAUAAGCAACAGUGGUGCA -------------------((...((((..(((((((((((......))))))))))).))))((((((..(((----....).))(((.((.(((....))).)))))..)))))))). ( -39.50) >DroSec_CAF1 19035 97 - 1 -------------------GCGUUGGCCCUUUAGCUGGGUUCAGGCCAACCCAGCUGGUGGCCGCCGCUUCCGG----GCAACUCGUGCAUUUUUCACCAGGAUAAGCAACAGUGGUGCA -------------------((...((((..(((((((((((......))))))))))).))))((((((..(((----....).))(((.((.(((....))).)))))..)))))))). ( -39.50) >DroSim_CAF1 19344 97 - 1 -------------------GCGUUGGCCCUUUAGCUGGGUUCAGGCCAACCCAGCUGGUGGCCGCCGCUUCCGG----GCAACUCGUGCAUUUUUCACCAGGAUAAGCAACAGUGGUGCA -------------------((...((((..(((((((((((......))))))))))).))))((((((..(((----....).))(((.((.(((....))).)))))..)))))))). ( -39.50) >DroEre_CAF1 24122 91 - 1 ------------------------GGACCUUUAGCUGGGUUCAGGCCAACCCAGCUGGUGGUCGCCGCUUCCG-----GCAACUCGUGCAUUUUUCACCAGGAUAAGCAACAGUGCUGUA ------------------------.((((.(((((((((((......))))))))))).))))((((....))-----))..((.(((.......))).))....((((....))))... ( -34.80) >DroAna_CAF1 15129 113 - 1 CUUUUGAUAUUUUUUGCUCCUUUUACCCCUUUGGCUGGGAUCACGCCAACACAGCUGGUGGUUGGCGCUUCCGGUUGGAGAGCUCAUGCAUUUUUCACCAGC------AACUG-GGUGCG .......................((((((((..(((((((...(((((((((.....)).))))))).)))))))..))).((....)).............------....)-)))).. ( -34.90) >consensus ___________________GCGUUGGCCCUUUAGCUGGGUUCAGGCCAACCCAGCUGGUGGCCGCCGCUUCCGG____GCAACUCGUGCAUUUUUCACCAGGAUAAGCAACAGUGGUGCA ...................(((.(((((..(((((((((((......))))))))))).))))).)))..........(((.....)))......(((((.............))))).. (-22.50 = -24.58 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:55 2006