Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,567,726 – 3,567,825 |
Length | 99 |
Max. P | 0.513172 |
Location | 3,567,726 – 3,567,825 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -31.73 |
Consensus MFE | -28.32 |
Energy contribution | -29.07 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.89 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3567726 99 + 27905053 UAACGUUAUUGGCAGCUGGCAAUAACAACGCCGUCAUGGGCAGCAUGUGGCUGAGGAUCGUGAAAAACAGAGUGAGAACUACUGCCACCCAACUGUCCG ....(((((((.(....).)))))))...((((.((((.....))))))))...((((.((......((((((....))).))).......)).)))). ( -28.32) >DroSec_CAF1 18677 99 + 1 UAACGUUAUUGGCAGCUGGCAAUAACAACGCCGUCAUGGGCAGCAUGUGGCUGCGGAUCCUGAAAAACAGUGUGCGAACUGCUGCCACACAACUGUCCG ....(((((((.(....).)))))))...........((((((..((((((.((((.(((((.....))).....)).)))).))))))...)))))). ( -35.60) >DroSim_CAF1 18986 99 + 1 UAACGUUAUUGGCAGCUGGCAAUAACAACGCCGUCAUGGGCAGCAUGUGGCUGCGGAUCCUGAAAAACAGAGUGCGAACUGCUGCCACCCAACUGUCCG ....(((((((.(....).)))))))...........((((((...(((((.((((.(((((.....))).....)).)))).)))))....)))))). ( -33.80) >DroEre_CAF1 23763 99 + 1 UAACGUUAUUGGCAGCUGGCAAUAACAACACCAUCAUGGGCAGCAUGUGGCUGCGCAUCCAGAAAAACAGAGUGCGAACUGCUGCCACCCAACUGUCGG ....(((((((.(....).)))))))....((..((((((..(((.(..(...((((..(.........)..))))..)..))))..))))..))..)) ( -29.20) >consensus UAACGUUAUUGGCAGCUGGCAAUAACAACGCCGUCAUGGGCAGCAUGUGGCUGCGGAUCCUGAAAAACAGAGUGCGAACUGCUGCCACCCAACUGUCCG ....(((((((.(....).)))))))...........((((((...(((((.((((.((................)).)))).)))))....)))))). (-28.32 = -29.07 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:54 2006