Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,565,869 – 3,565,962 |
Length | 93 |
Max. P | 0.619129 |
Location | 3,565,869 – 3,565,962 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 84.91 |
Mean single sequence MFE | -26.55 |
Consensus MFE | -19.52 |
Energy contribution | -19.77 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.13 |
Mean z-score | -1.57 |
Structure conservation index | 0.74 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3565869 93 - 27905053 CUCCGAUGGGAGGCGAAAAAUAACCGGCAAUGUCAGAACAUUGUGAUGUUUUAAGCAU-------------UGUUGUCUUUACUCGGAUGAAAUCUGAUCGAACUU ((((....)))).(((........(((((((((.(((((((....)))))))..))))-------------))))).......((((((...)))))))))..... ( -23.90) >DroSec_CAF1 16823 106 - 1 CUCCGAUGGGAGGCGAAAAAUAACCAGCAAUGUCAGAACAUUGUGAUGUUUUAAGCAUUGUUCGAUUGCAUUGUUGUCUUUAUUCGUAUGAAAUCUGAUCGAGCUU ...((((.(((.(((((.((....(((((((((..(((((.(((..........))).)))))....)))))))))...)).)))))......))).))))..... ( -29.60) >DroSim_CAF1 17126 106 - 1 CUCCGAUGGGAGGCGAAAAAUAACCAGCAAUGUCAGAACAUUGUGAUGUUUUAAGCAUUGUUCGAUUGCAUUGUUGUCUUUAUUCGGAUGAAAUCUGAUCGAGCUU ((((....))))((..((((((....(((((((....)))))))..))))))..))...(((((((((.(((.(..(((......)))..)))).))))))))).. ( -29.20) >DroEre_CAF1 21899 102 - 1 --CUGAAUGGGAGCGAAAAAUAACCAGCAAUGUCAGAACAUUGUGAUGUUUUAAGCAUUGUUCGAUUGCAUUGCUG--CUUACUUGGAUGAAAUCUGAUCGAUUAU --...........(((....(((.(((((((((..(((((.(((..........))).)))))....)))))))))--.))).(..(((...)))..))))..... ( -23.50) >consensus CUCCGAUGGGAGGCGAAAAAUAACCAGCAAUGUCAGAACAUUGUGAUGUUUUAAGCAUUGUUCGAUUGCAUUGUUGUCUUUACUCGGAUGAAAUCUGAUCGAGCUU .(((((..((((((..((((((....(((((((....)))))))..)))))).((((.(((......))).))))))))))..))))).................. (-19.52 = -19.77 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:52 2006