Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,553,975 – 3,554,072 |
Length | 97 |
Max. P | 0.944975 |
Location | 3,553,975 – 3,554,072 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.77 |
Mean single sequence MFE | -28.44 |
Consensus MFE | -9.52 |
Energy contribution | -10.12 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.40 |
Mean z-score | -2.13 |
Structure conservation index | 0.33 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3553975 97 - 27905053 AAAA-ACAGCGAAAAAGA-AA--AAUCUUUAAGUUUUUCUGCUAGGCAA---AGUGAUGUAGUUGGCA----------GGAGAAAUUCAGCCGUCUGGCA----AGCGGACUUCUC--UG ....-.(((.(((..(((-((--(((......))))))))(((((((..---(....)......(((.----------(((....))).)))))))))).----.......))).)--)) ( -25.40) >DroSec_CAF1 12779 101 - 1 AAAAAAAUGCUAAAAAGG-AA--AAUAUUUAAGUUUUUCUCAUAGGCAAAGAAGUGACGGAGUUGGCA----------GGAGAAACUCAGCCGGCUGGCA----AGCGGACUUCGC--UG .......((((....(((-((--(((......))))))))....)))).........(((((((.((.----------.(((...))).(((....))).----.)).))))))).--.. ( -26.60) >DroSim_CAF1 13059 101 - 1 AAAAAACAGCUAAAAAGG-AA--AAUCUUUAAGUUUUUCUCCUAGGCAAAGAAGUGACGGAGUUGGCA----------GGAGAAACUCAGCCGGCUGGCA----AGCGGACUUCGC--UG ........(((....(((-((--(((......))))))))....)))..........(((((((.((.----------.(((...))).(((....))).----.)).))))))).--.. ( -25.50) >DroEre_CAF1 17450 97 - 1 AAAA-ACAGCGAGAAAGGAAA--AAUCUUUAAGUUUUUCAGCUAGGCAA---AGUGAUGGAGUUGGCA----------GAGGAAACUGGGCCGGCUGGCA-----GCGGACUUUGC--CG ....-..(((.......((((--(((......))))))).))).(((((---(((..((.(((((((.----------.((....))..)))))))..))-----....)))))))--). ( -32.40) >DroAna_CAF1 9153 113 - 1 GGAA-ACAGGAAAAAAGG-AAAGAAUCUUUAAGUUU-GCUUCUAGGA-A---AGCGCUCAAGAUGGCACGGCUUGGAUAGAAAAACUGUGCCGACUGAGAGCCUGGCGGACUUGGCUCUG (...-.).(((...((((-(.....)))))((((((-(((.......-.---((.((((.((.((((((((.((........)).)))))))).))..)))))))))))))))...))). ( -32.30) >consensus AAAA_ACAGCGAAAAAGG_AA__AAUCUUUAAGUUUUUCUCCUAGGCAA___AGUGAUGGAGUUGGCA__________GGAGAAACUCAGCCGGCUGGCA____AGCGGACUUCGC__UG .........................................................(((((((.((............(((...))).(((....)))......)).)))))))..... ( -9.52 = -10.12 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:49 2006