Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,551,751 – 3,551,865 |
Length | 114 |
Max. P | 0.990072 |
Location | 3,551,751 – 3,551,865 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 94.71 |
Mean single sequence MFE | -27.47 |
Consensus MFE | -25.21 |
Energy contribution | -25.71 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -3.11 |
Structure conservation index | 0.92 |
SVM decision value | 2.19 |
SVM RNA-class probability | 0.990072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3551751 114 + 27905053 UUUUGUUGUCAGCAUCAAAAAUAUUUUCCCUGCCGCAAAGAAAAACAACAAAUAAAACCAGAA--AAGAAA-AAAAUUCGGCGGCAGGCAGGAAAAAGCUGUUGAUAGAGAACAGAU .((((((.((...(((((.....(((((((((((((...(((.....................--......-....))).)))))))...)))))).....))))).)).)))))). ( -27.78) >DroSec_CAF1 10614 116 + 1 UUUUGUUGUCAGCAUCAAAAAUAUUUUCCCUGCCGCAAAGAAAAACAACAGAUAAAACCAGCAGAAGGAAA-AAAAUUGGGCGGCAGGCAGGAAAAAGCUGUUGAUAGAGAACAGAU .((((((.((...(((((.....(((((((((((((.........(....)......((((..........-....)))))))))))...)))))).....))))).)).)))))). ( -28.04) >DroSim_CAF1 10880 117 + 1 UUUUGUUGUCAGCAUCAAAAAUAUUUUCCCUGCCGCAAAGAAAAACAACAGAUAAAACCAGCAGAAGGAAAAAAAAUUGGGCGGCAGGCAGGAAAAAGCUGUUGAUAGAGAACAGAU .((((((.((...(((((.....(((((((((((((.........(....)......((((...............)))))))))))...)))))).....))))).)).)))))). ( -27.96) >DroEre_CAF1 11061 114 + 1 UUUUGUUGUCAGCAUCAAAAAUAUUUUCCGUGCCGCAAAGAAAAACAACAACUAAAACCAGAAGA--GGAA-AAAAUUGGGCGGCAGGCAGGAAAAAGCUGUUGAUAGAGAACAGAU .((((((.((...(((((.....((((((.((((((...(.....)...........((......--))..-........))))))....)))))).....))))).)).)))))). ( -26.10) >consensus UUUUGUUGUCAGCAUCAAAAAUAUUUUCCCUGCCGCAAAGAAAAACAACAAAUAAAACCAGAAGAAGGAAA_AAAAUUGGGCGGCAGGCAGGAAAAAGCUGUUGAUAGAGAACAGAU .((((((.((...(((((.....(((((((((((((...(.....)...........((((...............)))))))))))...)))))).....))))).)).)))))). (-25.21 = -25.71 + 0.50)
Location | 3,551,751 – 3,551,865 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 94.71 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -21.70 |
Energy contribution | -21.95 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.43 |
Structure conservation index | 0.87 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3551751 114 - 27905053 AUCUGUUCUCUAUCAACAGCUUUUUCCUGCCUGCCGCCGAAUUUU-UUUCUU--UUCUGGUUUUAUUUGUUGUUUUUCUUUGCGGCAGGGAAAAUAUUUUUGAUGCUGACAACAAAA ...((((.((((((((.((..((((((...((((((((((((...-..((..--....))....)))))............)))))))))))))..)).))))))..)).))))... ( -24.70) >DroSec_CAF1 10614 116 - 1 AUCUGUUCUCUAUCAACAGCUUUUUCCUGCCUGCCGCCCAAUUUU-UUUCCUUCUGCUGGUUUUAUCUGUUGUUUUUCUUUGCGGCAGGGAAAAUAUUUUUGAUGCUGACAACAAAA ...((((.((((((((.((..((((((...(((((((.((((...-...((.......))........)))).........)))))))))))))..)).))))))..)).))))... ( -25.04) >DroSim_CAF1 10880 117 - 1 AUCUGUUCUCUAUCAACAGCUUUUUCCUGCCUGCCGCCCAAUUUUUUUUCCUUCUGCUGGUUUUAUCUGUUGUUUUUCUUUGCGGCAGGGAAAAUAUUUUUGAUGCUGACAACAAAA ...((((.((((((((.((..((((((...(((((((.((((.......((.......))........)))).........)))))))))))))..)).))))))..)).))))... ( -25.46) >DroEre_CAF1 11061 114 - 1 AUCUGUUCUCUAUCAACAGCUUUUUCCUGCCUGCCGCCCAAUUUU-UUCC--UCUUCUGGUUUUAGUUGUUGUUUUUCUUUGCGGCACGGAAAAUAUUUUUGAUGCUGACAACAAAA ...((((.((((((((.((..((((((....((((((.(((((..-..((--......))....)))))............)))))).))))))..)).))))))..)).))))... ( -24.52) >consensus AUCUGUUCUCUAUCAACAGCUUUUUCCUGCCUGCCGCCCAAUUUU_UUUCCUUCUGCUGGUUUUAUCUGUUGUUUUUCUUUGCGGCAGGGAAAAUAUUUUUGAUGCUGACAACAAAA ...((((.((((((((.((..((((((...(((((((............................................)))))))))))))..)).))))))..)).))))... (-21.70 = -21.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:47 2006