Locus 1170

Sequence ID 3R_DroMel_CAF1
Location 3,548,185 – 3,548,304
Length 119
Max. P 0.755874
window1918

overview

Window 8

Location 3,548,185 – 3,548,304
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 94.96
Mean single sequence MFE -37.92
Consensus MFE -35.51
Energy contribution -36.07
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.60
Structure conservation index 0.94
SVM decision value 0.49
SVM RNA-class probability 0.755874
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3548185 119 - 27905053
CUCUGCACUGGAUGCGCCUGAGUCUUCCUUCGACAUGGCGACCGUCUCCGUUGCGCUAGAACAGUUGAGGGAGAGUCGAUCUGGUUUCCAGUAGCAUUUGUAACUUUACAUUUAUAAAU
...(((((((((...((((((.(((.((((((((.(((((..((....))...))))).....))))))))))).)))....))).)))))).)))(((((((........))))))). ( -38.30)
>DroSec_CAF1 7079 119 - 1
CUCUGCACUGGAUGCGCCUGAGUCUUCCUUCGACAUGGCGGCCGUCUCCGGUGUGCUAGAACAGUUGAGGGAGAGUCGAUCUGUUUUCCAGUAGCAUUUGUAACUUAACAUUUAUAAAU
...(((((((((.(((..(((.(((.((((((((.(((((((((....)))).))))).....))))))))))).)))...)))..)))))).)))(((((((........))))))). ( -40.20)
>DroSim_CAF1 7360 119 - 1
CUCUGCACUAGAUGCGCCUGAGUCUUCCUUCGACAUGGCGGCCGUCUCCGGUGUGCUAGAACAGUUGAGGGAGAGUCGAUCUGGUUUCCAGUAGCAUUUGUAACUUUACAUUUAUAAAU
........(((((((...(((.(((.((((((((.(((((((((....)))).))))).....))))))))))).)))..((((...))))..)))))))................... ( -35.10)
>DroEre_CAF1 7440 119 - 1
CUCCGCACUGGAUGCGCCCGAGUCUUCCUUCGACAUGGCUGCCGUCUCCGGUGUGCUAGAACAGUUGAGGGAGAGUCGAUCUGGUUUCCAAUAGCAUUUGUAAAUUUACAUUUAUGAAU
....((..((((...((((((.(((.((((((((.(((((((((....))))).)))).....))))))))))).)))....))).))))...))(((..(((((....)))))..))) ( -38.10)
>consensus
CUCUGCACUGGAUGCGCCUGAGUCUUCCUUCGACAUGGCGGCCGUCUCCGGUGUGCUAGAACAGUUGAGGGAGAGUCGAUCUGGUUUCCAGUAGCAUUUGUAACUUUACAUUUAUAAAU
....((((((((...((((((.(((.((((((((.(((((((((....)))).))))).....))))))))))).)))....))).)))))).))((((((((........)))))))) (-35.51 = -36.07 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:44 2006