Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,547,119 – 3,547,220 |
Length | 101 |
Max. P | 0.946373 |
Location | 3,547,119 – 3,547,220 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 69.71 |
Mean single sequence MFE | -21.82 |
Consensus MFE | -8.66 |
Energy contribution | -8.90 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.29 |
Mean z-score | -2.09 |
Structure conservation index | 0.40 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3547119 101 + 27905053 CAACUUGGUUUGUGGGUACUCACACACCAAAAA-AAAACGCGGGUUUGUCUGAAUUAAACCCAAACAUAAAUACUUGG--CUUA------UAUUUAAAGCUAUUUUUUCA ....(((((.(((((....))))).)))))(((-(((....(((((((.......))))))).............(((--(((.------......)))))))))))).. ( -24.20) >DroSec_CAF1 6011 99 + 1 CAACUUGGUUUGUGGGUACUCACAGACCAAAA---AAAUAUGAGUUUGUUUGAAUUAAACCCAAAAACAAGUACUGGG--CUUU------UAUUUAAAGCGAUUUUUUCA ....(((((((((((....)))))))))))..---.....((((.((((((((((.(((((((...........))))--.)))------.)))).))))))....)))) ( -24.00) >DroSim_CAF1 6296 99 + 1 CAACUUGGUUU---GGUACUCACAGACCAAAAAAAAAAUAAGAGUUUGUUUGAAUUAAGCCCAAAAACAAAUACUGGG--CUUU------UAUUUAAAGCGAUUUUUUCA ....(((((((---(.......)))))))).........(((((((..(((((((.(((((((...........))))--))).------.)))))))..)))))))... ( -25.00) >DroEre_CAF1 6443 94 + 1 CAACUUGGUUUGUGGGCAGUAACACACCAACA---AAAUGUGGGUUUGUUUCAGGUAAGGACAUAAGCAAAAACUU--UAUGUUUGUUUACAUUU-----------GUUA .(((......(((((((.(.((((.(((.((.---....)).))).)))).)......(((((((((.......))--))))))))))))))...-----------))). ( -18.20) >DroYak_CAF1 6921 106 + 1 CAACUUGGUUUGUGGGUAGUCAUACACUAAAA---AAAAAGUUGUUUGUUUGAAGUUAGCACAAAAACAAAAACUUGGUAUACAUACAUACAUUUAAAGCCCGCU-UUUA ...........((((((...............---...(((((.(((((((...((....))..)))))))))))).((((......)))).......)))))).-.... ( -17.70) >consensus CAACUUGGUUUGUGGGUACUCACACACCAAAA___AAAUAUGAGUUUGUUUGAAUUAAGCCCAAAAACAAAUACUUGG__CUUU______UAUUUAAAGCGAUUUUUUCA ....(((((.(((((....))))).)))))..............(((((((.............)))))))....................................... ( -8.66 = -8.90 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:43 2006