Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,545,915 – 3,546,022 |
Length | 107 |
Max. P | 0.732373 |
Location | 3,545,915 – 3,546,022 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.10 |
Mean single sequence MFE | -34.02 |
Consensus MFE | -30.50 |
Energy contribution | -31.20 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.03 |
Mean z-score | -1.35 |
Structure conservation index | 0.90 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3545915 107 + 27905053 GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUGUGAUGACGGGUACGUUGUCACGCAGGCGAAU-----GGGAUUCCGGAAG-------- .........((((((((........((((.((((((...(((.(((...)))))).))))))((((..(((....)))..))))...))))..)-----)))))))......-------- ( -33.40) >DroSec_CAF1 4799 107 + 1 GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUGUGAUGACGGGUACGUUGUCACGCAGGCGGAU-----GGGAUUCCGGAAG-------- .........((((((((........((((.((((((...(((.(((...)))))).))))))((((..(((....)))..))))...))))..)-----)))))))......-------- ( -34.50) >DroSim_CAF1 5076 107 + 1 GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUGUGAUGACGGGUACGUUGUCACGCAGGCGAAU-----GGGAUUCCGGAAG-------- .........((((((((........((((.((((((...(((.(((...)))))).))))))((((..(((....)))..))))...))))..)-----)))))))......-------- ( -33.40) >DroEre_CAF1 5088 106 + 1 GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUGUGAUGACGGGUACGUUGUCACGCAG-CGGAU-----GGGAUUCCGGAAG-------- .........((((((((....((.((((((((....))))..((((...)))))))).((.(((((..(((....)))..))))))))-)...)-----)))))))......-------- ( -33.50) >DroYak_CAF1 5581 107 + 1 GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUUUGAUGACGGGUACGUUGUCACGCAGGCGAAU-----GGGAUUCCGGAAG-------- .........((((((((...........((((....))))........(((((((((.......((..(((....)))..)))))))))))..)-----)))))))......-------- ( -31.01) >DroAna_CAF1 1731 120 + 1 GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCAUGUGAUGUGAUGACGGGGACGUUGUCACGGAGCAAAAUUGGAAGGGAUUCCCCCAAUCCCCUUA ............((((((...((....((.((((((..((((.(((...)))))))))))))((((..(((....)))..)))))).))....))))))((((((.....)))))).... ( -38.30) >consensus GUACGUGUCGAAUUCCAAAUAGCAACGCCAGUCAUAACUGUAAGACAAUGUCUGCGUGUGAUGUGAUGACGGGUACGUUGUCACGCAGGCGAAU_____GGGAUUCCGGAAG________ .........(((((((.........((((.((((((..((((.(((...)))))))))))))((((..(((....)))..))))...))))........))))))).............. (-30.50 = -31.20 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:42 2006