Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,519,722 – 3,519,820 |
Length | 98 |
Max. P | 0.967235 |
Location | 3,519,722 – 3,519,820 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 92.45 |
Mean single sequence MFE | -26.04 |
Consensus MFE | -26.66 |
Energy contribution | -25.46 |
Covariance contribution | -1.20 |
Combinations/Pair | 1.22 |
Mean z-score | -1.35 |
Structure conservation index | 1.02 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3519722 98 - 27905053 UUAGCUGUGCAAUAUUCUCUAGGAAAUUAGUUUCCCUUACGGGAAUCGCUGCUUAUAUCGAUACGGCGAACCUUCGCUGCAAUCUCCAGGGAAACCUC ..............((((((.(((...(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... ( -25.60) >DroSec_CAF1 2481 98 - 1 UUAGCUGUGCAAUGUUCUCUAGGAAAUUAGCUUCCCUUACGGGAAUCGCUGCUUAUAUCGAUACGGCGAACCUUCGCUGCAAUCUCCAGGGAGACCUC ..............((((((.(((...(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... ( -26.60) >DroSim_CAF1 2480 98 - 1 UUAGCUGUGCAAUAUUCUCUAGGAAAUUAGUUUCCCUUACGGGAAUCGCUGCUUAUAUCGAUACGGCGAACCUUCGCUGCAAUCUCCAGGGAGACCUC ..............((((((.(((...(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... ( -25.30) >DroEre_CAF1 2456 98 - 1 CUAGCUAUGCAAUAUUCUCUGGGAAAUUAGUUUCCCUGACGGGAAUCGCUGCUUAUAUCGAUAUGGCGAACAUUUGCCGCAAUCUCCAGGGGAACCUC ..............(((((((((....(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... ( -26.40) >DroYak_CAF1 2514 98 - 1 CUAGCUAUGCACUAUUCUCUAGGAAAUUAGUUUCCCUUAUGGGAACUGCUGCUUAUAUCGAUACGGCGAACCUUUGCCGCAAUCUCCAGGGAAACCUC ..............((((((.(((...(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... ( -26.30) >consensus UUAGCUGUGCAAUAUUCUCUAGGAAAUUAGUUUCCCUUACGGGAAUCGCUGCUUAUAUCGAUACGGCGAACCUUCGCUGCAAUCUCCAGGGAAACCUC ..............((((((.(((...(((((((((....)))))..))))........(((.((((((....))))))..))))))))))))..... (-26.66 = -25.46 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:38 2006