Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,518,655 – 3,518,753 |
Length | 98 |
Max. P | 0.642745 |
Location | 3,518,655 – 3,518,753 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.18 |
Mean single sequence MFE | -40.58 |
Consensus MFE | -29.02 |
Energy contribution | -28.97 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.47 |
Mean z-score | -1.20 |
Structure conservation index | 0.71 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642745 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3518655 98 - 27905053 CACUUGGAGUGGCGAAGUGGUUAUGUUGCUGCUGUCCCUCCGCCUCCUGCCCAGAGUGUUGCUAAUGGUUCGCGGCGGCGGCAGAGGAGCGUUGAAAU (((((.(.....).)))))........(((.((.(.((.(((((.(..(((...((.....))...)))..).))))).)).).)).)))........ ( -32.10) >DroVir_CAF1 1584 98 - 1 CAGCAUAAGCGGCGAUGUGGUUAUGUUGCUGCUAUCUCGACGCCGCCGGCCCAGCGUGCUGCUAAUGGUGCGCGGCGGUGGUAGCGGCGCGGUAAAAU .......(((((((((((....)))))))))))...(((.(((((((.((((.(((..((......))..))).).))).)..)))))))))...... ( -42.50) >DroPse_CAF1 1426 98 - 1 CAGCUGCAGUGGUGAUGUGGUAAUGUUGCUGCUGUCCCGUCGCCGCCGCCCCAGAGUGCUGCUGAUGGUGCGAGGCGGCGGCAGGGGGGCACUGAAGU ..(((((((..(..((((....))))..)..))))(((.(.(((((((((.....(..((......))..)..)))))))))).))))))........ ( -48.40) >DroGri_CAF1 7319 98 - 1 AAGCAUUAGUGGCGAUGUGGUUAUAUUACUGCUAUCUCGUCGCCGCCGGCCCAGUGUGCUGCUAAUAGUCCUCGGUGGUGGCAGCGGUGCCUGAAAAU ........(((((((((.(((............))).))))))))).(((((.((.(((..(((...(....)..)))..))))))).)))....... ( -33.50) >DroEre_CAF1 1432 98 - 1 CACUUGGAGUGGCGAAGUGGUUAUGUUGCUGCUGUCCCUCCGCCGCCGUCCAAGCGUAUUGCUAAUCGUUCGCGGCGGCGGCAAAGGAGCGUUGAAAU ..(((((((.((...((..((......))..))..))))))((((((((((.((((..........)))).).))))))))).)))............ ( -38.60) >DroPer_CAF1 1414 98 - 1 CAGCUGCAGUGGUGAUGUGGUAAUGUUGCUGCUGUCCCGUCGCCGCCGCCCCAGAGUGCUGCUGAUGGUGCGAGGCGGCGGCAGGGGGGCACUGAAGU ..(((((((..(..((((....))))..)..))))(((.(.(((((((((.....(..((......))..)..)))))))))).))))))........ ( -48.40) >consensus CAGCUGCAGUGGCGAUGUGGUUAUGUUGCUGCUGUCCCGUCGCCGCCGGCCCAGAGUGCUGCUAAUGGUGCGCGGCGGCGGCAGAGGAGCGUUGAAAU ..(((..(((((((((((....)))))))))))...((((.(((((((.((....(..((......))..)..))))))))).)))))))........ (-29.02 = -28.97 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:37 2006