Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,518,307 – 3,518,400 |
Length | 93 |
Max. P | 0.855624 |
Location | 3,518,307 – 3,518,400 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 80.56 |
Mean single sequence MFE | -39.57 |
Consensus MFE | -25.86 |
Energy contribution | -24.17 |
Covariance contribution | -1.69 |
Combinations/Pair | 1.39 |
Mean z-score | -2.12 |
Structure conservation index | 0.65 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.855624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3518307 93 - 27905053 UCAAGGGAU---AUUGCUGCUGGAGGAUUUCAUCACUCGGUUCGGUUAGGGCCGAAUGUUGUCUCUGCAGGAGCAUCUCGUAGUGCUGCGGCUCGU ....(((..---..((((.(((.(((((..(((...(((((((.....))))))))))..))).)).))).))))..(((((....)))))))).. ( -32.70) >DroPse_CAF1 1066 94 - 1 --AUGUGCUGCAGCUGCUGCUGCAGGAUGUCCUCGCUGGGUUCGGUGAGGGCCGAGUGCUGGCGCUGGAGCAGCAUUUCGUAGUGCUGCGGCUCGU --(((.(((((((((((((((.(((.....((((((((....))))))))((((.....)))).))).))))))).........)))))))).))) ( -49.40) >DroEre_CAF1 1084 93 - 1 UCAAGGGAU---ACUGCUGUUGGAGGAUGUCAUCACUCGGCUCGGUCAGGGCCGAGUGUUGUCUCUGGAGGAGCAUCUCAUAGUGCUGCGGCUCGU ....(((((---.((.((.(..((((....((.((((((((((.....)))))))))).))))))..))).)).)))))...(.((....)).).. ( -37.00) >DroYak_CAF1 1098 93 - 1 UCAGGGGAU---AUUGCUGUUGCAGGAUGUCUUCACUCGGUUCGGUUAGGGCCGAAUGUUGUCUCUGCAGGAGCAUCUCAUAGUGCUGCGGCUCGU ....((((.---..((((.((((((((((....((.(((((((.....))))))).)).)))).)))))).))))))))...(.((....)).).. ( -33.60) >DroAna_CAF1 1039 93 - 1 GCGUAGGAU---ACUGGGGCUGCAGGACAUCCUCACUGGGCUCCGUAAGAGCCGAAUGCUGGCGCUGGAGCAGCAUUUCGUAGUGUUGUGGCUCGU ...(((...---.)))((((..((((....)).((((((((((.....)))))((((((((.(......)))))))))..))))).))..)))).. ( -34.30) >DroPer_CAF1 1054 94 - 1 --AUGUGCUGCAGCUGCUGCUGCAGGAUGUCCUCGCUGGGCUCGGUGAGGGCCGAGUGCUGGCGCUGGAGCAGCAUUUCGUAGUGCUGCGGCUCGU --(((.(((((((((((((((.(((..((((..((((.(((((.....))))).))))..))))))).))))))).........)))))))).))) ( -50.40) >consensus UCAUGGGAU___ACUGCUGCUGCAGGAUGUCCUCACUCGGCUCGGUGAGGGCCGAAUGCUGGCGCUGGAGCAGCAUCUCGUAGUGCUGCGGCUCGU ..................(((((((.((..........(((((.....)))))(((((((.((......))))))).))...)).))))))).... (-25.86 = -24.17 + -1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:36 2006