Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,512,034 – 3,512,139 |
Length | 105 |
Max. P | 0.751913 |
Location | 3,512,034 – 3,512,139 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.72 |
Mean single sequence MFE | -27.95 |
Consensus MFE | -26.04 |
Energy contribution | -26.84 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.20 |
Structure conservation index | 0.93 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3512034 105 - 27905053 AGAGAGACAGAAAAGUGAGUGUGGGCAGAACGUAAGUGUAGGCCACAAAGCACGCAGAACAUCAUCGCAACGUGGCGUAUGCGUAAUGUGCAUUGUUAACAUUUG .....(((((....(((..(((((.(...((....))...).)))))...)))((...((((...(((((((...))).))))..)))))).)))))........ ( -27.80) >DroSec_CAF1 109434 104 - 1 -GGGAGAUAGAAAAGUGAGUGUGGGCAGAACGUAAGUGUAGGCCACGAAGCACGCAGAACAUCAUCGCAACGUGGCGUAUGCGUAAUGUGCAUUGUUAACAUUUG -...............((((((..((((.((((..(((((.((((((..((...............))..)))))).)))))...))))...))))..)))))). ( -29.36) >DroSim_CAF1 134249 104 - 1 -GGGAGAUAGAAAAGUGAGUGUGGGCAGAACGUAAGUGUAGGCCACGAAGCACGCAGAACAUCAUCGCAACGUGGCGUAUGCGUAAUGUGCAUUGUUAACAUUUG -...............((((((..((((.((((..(((((.((((((..((...............))..)))))).)))))...))))...))))..)))))). ( -29.36) >DroEre_CAF1 119230 101 - 1 -GAG--AGAGAACAGAGAGUGUGGGCAGAUCGUAAGUGUAGGCCACGAAGCAGGCA-GACAUCAACGCAACGUGGCGUAUGCGUAAUGUGCAUUGUUAACAUUUG -...--..........((((((..((((..(((..(((((.((((((..((.....-.........))..)))))).)))))...)))....))))..)))))). ( -27.34) >DroYak_CAF1 175398 104 - 1 -GAGACAGAGAAAUGAGAGUGUGGGCCGAUCGUAAGUGUAGGCCACGAAGCACGCAAAACAUCAUCGCAACGUGGCGUAUGCGUAAUGUGCAUUGUUAACAUUUG -.........(((((...((((.((((...(....)....)))).....))))((((.((((...(((((((...))).))))..))))...))))...))))). ( -25.90) >consensus _GAGAGAGAGAAAAGUGAGUGUGGGCAGAACGUAAGUGUAGGCCACGAAGCACGCAGAACAUCAUCGCAACGUGGCGUAUGCGUAAUGUGCAUUGUUAACAUUUG ................((((((..((((.((((..(((((.((((((..((...............))..)))))).)))))...))))...))))..)))))). (-26.04 = -26.84 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:33 2006