Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,508,180 – 3,508,270 |
Length | 90 |
Max. P | 0.583082 |
Location | 3,508,180 – 3,508,270 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.92 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -20.30 |
Energy contribution | -20.33 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.21 |
Mean z-score | -1.13 |
Structure conservation index | 0.74 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3508180 90 + 27905053 UCGGGCAUUAACGCCAGUUAGUGGUCCGCAUCCGUGUCUAUAUG--------U-----GCACGGCUAUA------UGUAUAUGAGGCUCGAGUUGUUUCGCUUUGCUUG ..((((((((((....)))))).))))(((..((.((((.((((--------(-----(((........------)))))))))))).))(((......))).)))... ( -24.90) >DroSec_CAF1 105592 90 + 1 UCGGGCAUUAACGCCAGUUAGUGGUCCGCAUCCGUGUCUAUAUG--------U-----GCACGGCUAUA------UGUAUAUGAGGCUCGAGUUGUUUCGCUUUGCUUG ..((((((((((....)))))).))))(((..((.((((.((((--------(-----(((........------)))))))))))).))(((......))).)))... ( -24.90) >DroSim_CAF1 130376 90 + 1 UCGGGCAUUAACGCCAGUUAGUGGUCCGCAUCCGUGUCUAUAUG--------U-----GCACGGCUAUA------UGUAUAUGAGGCUCGAGUUGUUUCGCUUUGCUUG ..((((((((((....)))))).))))(((..((.((((.((((--------(-----(((........------)))))))))))).))(((......))).)))... ( -24.90) >DroEre_CAF1 115472 100 + 1 UCGGGCAUUAACGCCAGUUAGUGGUCCGCAUCCGUGUCUAUAUGUCGGUAUGGCUAUGGCACGGCUAUG---------AUAUGGGGCUCGAGUUGUUUCGCUUUGCUUG ..((((((((((....)))))).))))((.((((((((.(((.((((.....((....)).))))))))---------))))))))).(((((.(.....)...))))) ( -31.40) >DroYak_CAF1 171662 104 + 1 UCGGGCAUUAACGCCAGUUAGUGGUCCGCAUCCGUGCCUAUAUAUCUAUAUGU-----GCACGGCUAUAUAUGUAUGUAUAUGAGGCUCGAGUUGUUUCGCCUUGCUUG ..((((((((((....)))))).))))(((.((((((.(((((....))))).-----)))))).(((((((....)))))))((((..(((....))))))))))... ( -32.30) >DroAna_CAF1 99818 78 + 1 GCGGGCAUUAACGCCAGUUAGUGUUCCGCAUCCGAGCUUGUAUU--------U-----U----GC--------------UGGAAGACAUGAGUUGUUUUGCUUUGUUUG ((((((((((((....))))))).))))).(((.(((.......--------.-----.----))--------------))))(((((.((((......))))))))). ( -26.60) >consensus UCGGGCAUUAACGCCAGUUAGUGGUCCGCAUCCGUGUCUAUAUG________U_____GCACGGCUAUA______UGUAUAUGAGGCUCGAGUUGUUUCGCUUUGCUUG ..((((((((((....))))))).)))(((.((((((.....................))))))..................(((((.......)))))....)))... (-20.30 = -20.33 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:32 2006