Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,508,070 – 3,508,162 |
Length | 92 |
Max. P | 0.974117 |
Location | 3,508,070 – 3,508,162 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 71.14 |
Mean single sequence MFE | -26.26 |
Consensus MFE | -12.18 |
Energy contribution | -11.76 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.20 |
Mean z-score | -2.21 |
Structure conservation index | 0.46 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.974117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3508070 92 + 27905053 CAGUGGUA--GAGAACUUAAUGGGC-GAACCUCUCCCCCACACC----------AACUCAACCCCUUUGCACCCACAUCCACGUUAAGUGGGGUUCAUGAACCCG .((.(((.--(((.......((((.-((.....)).))))....----------..))).))).)).............(((.....)))(((((....))))). ( -21.42) >DroVir_CAF1 130627 80 + 1 CAUCGC--AU-CUCGCUUAAUGGGGGCAACGGCUCGUGCUGGC-----------CCUG-----------CAAUGCGAGUCGUGUUAAGUGGGGUUCACGAACCCC ...(((--..-(((((......(((((..((((....))))))-----------))).-----------....)))))..)))......((((((....)))))) ( -33.00) >DroSec_CAF1 105493 81 + 1 CAGUGGUU--GAGAACUUAAUGGGC-GAACCUCGCCCCCUCACU----------UCCU-----------CACCCACAUCCACGUUAAGUGGGGUUCAUGAACCCG ..((((.(--(((........((((-(.....))))).......----------..))-----------)).))))...(((.....)))(((((....))))). ( -29.83) >DroSim_CAF1 130277 81 + 1 CAGUGGUU--GAGAACUUAAUGGGC-GAACCUCGCCCCCUCACU----------UCCU-----------CACCCACAUCCACGUUAAGUGGGGUUCAUGAACCCG ..((((.(--(((........((((-(.....))))).......----------..))-----------)).))))...(((.....)))(((((....))))). ( -29.83) >DroEre_CAF1 115374 80 + 1 CAGCGGUU--CAACACUUAAUGGGC-GAACCGCUCCACCUGCC-----------CCCU-----------CACACACAUCCACGUUAAGUGGGGUUCAUGAACCCG .(((((((--(..(.(.....))..-)))))))).........-----------....-----------..........(((.....)))(((((....))))). ( -21.90) >DroYak_CAF1 171553 91 + 1 CGGCAGUU--GAACACUUAAUGGGC-GAACCUCCCCACCUUCCCACCACUCGUCCUCU-----------CACCCACAUCCACGUUAAGUGGGGUUCAUGAACCCG (((....(--((((.......((((-((.....................))))))...-----------..(((((...........)))))))))).....))) ( -21.60) >consensus CAGCGGUU__GAGAACUUAAUGGGC_GAACCUCUCCCCCUCAC___________CCCU___________CACCCACAUCCACGUUAAGUGGGGUUCAUGAACCCG ..............((((((((((......................................................)).)))))))).(((((....))))). (-12.18 = -11.76 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:31 2006