Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,490,522 – 3,490,619 |
Length | 97 |
Max. P | 0.687835 |
Location | 3,490,522 – 3,490,619 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 75.93 |
Mean single sequence MFE | -24.50 |
Consensus MFE | -17.29 |
Energy contribution | -17.57 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -1.07 |
Structure conservation index | 0.71 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3490522 97 - 27905053 UGCGCGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGAAUGCUGAAAACUGC---------------------CUCUGGAAACUGCAACUAGAAACUA (((((((((((((.((.........)))))))))......(((((.(((....)))...))))).....)))---------------------....(....).)))........... ( -25.60) >DroSec_CAF1 88054 97 - 1 UGCACGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGAAAGCGGAAAACUGC---------------------CUCUGGAAACUGCAACUGGAAACUA (((((..(((((..(((((..........)))))......)))))..)))))........((((....))))---------------------....(....).......(....).. ( -25.10) >DroSim_CAF1 112099 97 - 1 UGCACGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGAAAGCGGAAAACUGC---------------------CUCUGGAAACUGCAACUGGAAACUA (((((..(((((..(((((..........)))))......)))))..)))))........((((....))))---------------------....(....).......(....).. ( -25.10) >DroEre_CAF1 97266 98 - 1 UGCACGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGAAAGCUGAAAACUGC--------CUCUGGAAACUGCAACUGGAAACUGC------------ ((((.((((((((.((.........)))))))........((((..(((....)))....))))......))--------)...(....)))))...(....)...------------ ( -25.30) >DroYak_CAF1 153901 118 - 1 UGCACGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGGAAACUGAAAGCUGAAUGCUGAGAACUGAAAACUGCCUCUGGAAACUGCAACUGGAAACUA (((((..(((((..(((((..........)))))......)))))..)))))..(..(...((...(((.....))).))..........(((....(....).))).)..)...... ( -28.20) >DroAna_CAF1 82856 77 - 1 UGCGCGGCACUCAAGUGCUCAAUAAACUCAGCGCGACAAGCGGCAAAGUGCAAAACGAA-----------------------------------------AACUGCAACUGGAAACUC ((((((((((....)))))............(((.....))).....))))).......-----------------------------------------..........(....).. ( -17.70) >consensus UGCACGGCGCUGAAGUGCUCAAUAAACUCAGCGCGACAAACGGCGAAGUGCAAACUGAAAGCUGAAAACUGC_____________________CUCUGGAAACUGCAACUGGAAACUA (((((..(((((..(((((..........)))))......)))))..))))).................................................................. (-17.29 = -17.57 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:27 2006