Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,486,956 – 3,487,046 |
Length | 90 |
Max. P | 0.642515 |
Location | 3,486,956 – 3,487,046 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 66.14 |
Mean single sequence MFE | -18.71 |
Consensus MFE | -3.07 |
Energy contribution | -4.18 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.20 |
Mean z-score | -2.51 |
Structure conservation index | 0.16 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642515 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3486956 90 + 27905053 GAAUACACACAGAGUCCCC-ACACUCUGUCACACAUUUUAGGUUCGCAUAUGUGUGUACAUGUGACGCCCAGGCGGCCUCCCCCUCCCUAC .....((((((((((....-..)))))))(((((((.............))))))).....))).(((....)))................ ( -22.12) >DroVir_CAF1 107164 73 + 1 GCACACACACACAUACCCUAGCAUUCGCACACACAUUCCGAGCUGUCCCA------CACAUGUUAGGCGCAUGU-AUC----------UA- ..........((((.(((((((((........(((........)))....------...)))))))).).))))-...----------..- ( -11.46) >DroSec_CAF1 84523 73 + 1 GAAUACACACAGAGUCCCC-ACACUCUGUCAC-----------------AUGUGUGUACAUGUGCCGCCCAGGCGGCCUCCCCCUUCCUUC (.(((((((((((((....-..)))))))...-----------------..)))))).)....(((((....))))).............. ( -23.40) >DroSim_CAF1 108321 73 + 1 GAAUACACACAGAGUCCCC-ACACUCUGUCAC-----------------AUGUGUGUACAUGUGCCGCCCAGGCGGCCUCCCCCUCCCUUC (.(((((((((((((....-..)))))))...-----------------..)))))).)....(((((....))))).............. ( -23.40) >DroEre_CAF1 94092 83 + 1 GAAUACACACAGAGCACCC-ACACUCUGUCACACAUUUGAGGUCCGCACA------CACAUGUGCCACCCAUGU-GCCUCCCCCUCCCUAC ........((((((.....-...))))))..((((..((.(((..(((((------....))))).))))))))-)............... ( -17.90) >DroYak_CAF1 149077 83 + 1 GAAUACACAAAGAGUCCCC-ACCCUCUGUCACACAUUUUAGGUACGCACA------CACAUGUGCCGCCCAUGU-GCCUCCCCCUUCCUAC ..........((((.....-...))))....(((((....(((..(((((------....))))).))).))))-)............... ( -14.00) >consensus GAAUACACACAGAGUCCCC_ACACUCUGUCACACAUUU_AGGU_CGCACA______CACAUGUGCCGCCCAGGC_GCCUCCCCCUCCCUAC ........((((((.........))))))..................................((.((....)).)).............. ( -3.07 = -4.18 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:26 2006