Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,484,831 – 3,484,997 |
Length | 166 |
Max. P | 0.967151 |
Location | 3,484,831 – 3,484,938 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 89.35 |
Mean single sequence MFE | -23.52 |
Consensus MFE | -19.82 |
Energy contribution | -19.00 |
Covariance contribution | -0.81 |
Combinations/Pair | 1.17 |
Mean z-score | -1.48 |
Structure conservation index | 0.84 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3484831 107 + 27905053 GUGUAUUAGAUUUGAAUUCGGGUGCUCCCAUUUGCAAAUUAGCUUUUUCGGGCCUUAAACACAAGGCUCAUACAAGUUUACUCGAA-----AUAAAUGCAAACAAAAUCCUU .((((((.((((((.....(((....))).....))))))(((((....(((((((......)))))))....)))))........-----...))))))............ ( -23.00) >DroSec_CAF1 82419 107 + 1 GUGUAUUAGAUUUGAAUUCGGGUGCUCCCAUUUGCAAAUUAGCUUUUUCGGGCCUUAAACACGAGGCUCACAGCAGUUUACUCGAA-----AUAAAUGAAAACAAAAUCCUU .(((.((..(((((..(((((((((........))(((((.(((.....(((((((......)))))))..)))))))))))))))-----.))))).)).)))........ ( -22.80) >DroSim_CAF1 106217 107 + 1 GUGUAUUAGAUUUGAAUUCGGGUGCUCCCAUUUGCAAAUUAGCUUUUUCGGGCCUUAAACACGAGGCUCACACCAGUUUACUCGAA-----AUAAAUGAAAACAAAAUCCUU ((((....((((((.....(((....))).....)))))).........(((((((......)))))))))))..((((.(.....-----......).))))......... ( -21.90) >DroYak_CAF1 147111 111 + 1 GUUUAUUAAAUUCGAAUUCGGGUGCUCCCAAUUGCAAAAAAGCUUUUU-GGGCUUUAAACACAAGGCUCAUACAAGUUUACCCGAACGGUGUUAAAUACAAACAAAAUCCCU ((((.((((..(((..(((((((((........))....((((((..(-(((((((......))))))))...))))))))))))))))..))))....))))......... ( -26.40) >consensus GUGUAUUAGAUUUGAAUUCGGGUGCUCCCAUUUGCAAAUUAGCUUUUUCGGGCCUUAAACACAAGGCUCACACAAGUUUACUCGAA_____AUAAAUGAAAACAAAAUCCUU ((.((((.........((((((((..(......((......))......(((((((......)))))))......)..))))))))........))))...))......... (-19.82 = -19.00 + -0.81)
Location | 3,484,904 – 3,484,997 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 92.32 |
Mean single sequence MFE | -20.14 |
Consensus MFE | -16.10 |
Energy contribution | -16.85 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.03 |
Mean z-score | -3.24 |
Structure conservation index | 0.80 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3484904 93 + 27905053 AAGUUUACUCGAA-----AUAAAUGCAAACAAAAUCCUUUUGCAUUGCACAAAACAAUUGUGUAAACAAAUUUAACUAAAUUGCUUGUGUUUCGAGUA .....((((((((-----(((...((((..........((((..((((((((.....)))))))).))))..........))))...))))))))))) ( -25.65) >DroSec_CAF1 82492 93 + 1 CAGUUUACUCGAA-----AUAAAUGAAAACAAAAUCCUUUUUCAUUGCACAAAACAAUUGUGUAAACAAAUUUAACUAAAUUGCUUGUGUUUCGAGUA .....((((((((-----(((..((((((.........))))))((((((((.....))))))))......................))))))))))) ( -21.00) >DroSim_CAF1 106290 93 + 1 CAGUUUACUCGAA-----AUAAAUGAAAACAAAAUCCUUUUUCAUUGCACAAAACAAUUGUGUAAACAAAUUUAGCUAAAUUGCUUGUGUUUCGAGUA .....((((((((-----(((..((((((.........))))))((((((((.....))))))))........(((......)))..))))))))))) ( -22.50) >DroYak_CAF1 147183 98 + 1 AAGUUUACCCGAACGGUGUUAAAUACAAACAAAAUCCCUUUUCAUUGCACAAAACAAUAGUGUAAACAAAUUUAACUAAAUUGCUUGUGUUUCGAGUA .((((((.((....)).(((((((......((((....))))..((((((.........))))))....)))))))))))))(((((.....))))). ( -11.40) >consensus AAGUUUACUCGAA_____AUAAAUGAAAACAAAAUCCUUUUUCAUUGCACAAAACAAUUGUGUAAACAAAUUUAACUAAAUUGCUUGUGUUUCGAGUA .....((((((((........((((((((.........))))))))((((((..(((((...((((....))))....))))).)))))))))))))) (-16.10 = -16.85 + 0.75)
Location | 3,484,904 – 3,484,997 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 92.32 |
Mean single sequence MFE | -20.77 |
Consensus MFE | -18.30 |
Energy contribution | -18.18 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.29 |
Structure conservation index | 0.88 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3484904 93 - 27905053 UACUCGAAACACAAGCAAUUUAGUUAAAUUUGUUUACACAAUUGUUUUGUGCAAUGCAAAAGGAUUUUGUUUGCAUUUAU-----UUCGAGUAAACUU (((((((((....(((......))).....(((..(((.((((.((((((.....)))))).)))).)))..)))....)-----))))))))..... ( -22.80) >DroSec_CAF1 82492 93 - 1 UACUCGAAACACAAGCAAUUUAGUUAAAUUUGUUUACACAAUUGUUUUGUGCAAUGAAAAAGGAUUUUGUUUUCAUUUAU-----UUCGAGUAAACUG ((((((((((((((((((((..((((((....)))).))))))).)))))).((((((((.........))))))))..)-----))))))))..... ( -20.20) >DroSim_CAF1 106290 93 - 1 UACUCGAAACACAAGCAAUUUAGCUAAAUUUGUUUACACAAUUGUUUUGUGCAAUGAAAAAGGAUUUUGUUUUCAUUUAU-----UUCGAGUAAACUG ((((((((((((((((((((.(((.......))).....))))).)))))).((((((((.........))))))))..)-----))))))))..... ( -20.60) >DroYak_CAF1 147183 98 - 1 UACUCGAAACACAAGCAAUUUAGUUAAAUUUGUUUACACUAUUGUUUUGUGCAAUGAAAAGGGAUUUUGUUUGUAUUUAACACCGUUCGGGUAAACUU ((((((((....((((((.((.....)).)))))).......((((..((((((..((((....))))..))))))..))))...))))))))..... ( -19.50) >consensus UACUCGAAACACAAGCAAUUUAGUUAAAUUUGUUUACACAAUUGUUUUGUGCAAUGAAAAAGGAUUUUGUUUGCAUUUAU_____UUCGAGUAAACUG ((((((((.(((((((((((....((((....))))...))))).)))))).((((((((.........))))))))........))))))))..... (-18.30 = -18.18 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:25 2006