Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,484,442 – 3,484,542 |
Length | 100 |
Max. P | 0.978589 |
Location | 3,484,442 – 3,484,542 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 85.69 |
Mean single sequence MFE | -21.83 |
Consensus MFE | -16.88 |
Energy contribution | -16.50 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.16 |
Mean z-score | -1.97 |
Structure conservation index | 0.77 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3484442 100 + 27905053 GGC-----CAAAUAGCCCGUGAAAAUACAUUUCCAAAAGAAAUAAUGUUGUCUUCGUAUACGAAAUUCCACGGCUAUUUGGGUUAAUUAAGAAUCGAAAAUGCUU ..(-----(((((((((.(((.......(((((.....))))).........((((....))))....)))))))))))))........................ ( -23.20) >DroSec_CAF1 82032 100 + 1 GGC-----CAAAUAGCCCGUGAAAAUACAUUACCAAAGGAAAUAAUGUUGUCCUCGUAUAUAAAAUUCCACGGCUAUUUGGGUUAAUUAAGAACCAAAAAUGCUC (((-----(((((((((.(((.........(((...((((.(......).)))).)))..........))))))))))))((((.......))))......))). ( -21.91) >DroSim_CAF1 105830 100 + 1 GGC-----CAAAUAGCCCGUGAAAAUACAUUUCCAAAAGAAAUAAUGUUGUCCUCGUAUAUGAAAUUCCACGGCUAUUUGGGUUAAUUAAGAACCAAAAAUGCUC (((-----(((((((((.(((.......(((((.....))))).(((.......)))...........))))))))))))((((.......))))......))). ( -20.60) >DroYak_CAF1 146728 101 + 1 GGCAAAUGCAAAUAGCUCGUGAAAAUACAUAUUCGAACGAAAUAAUGUUGUUCUCAUAUACGAAGUACCACGGCUAUUUGGGUUAAUUAAAAAUCGAA--UCG-- ....(((.((((((((.((((....(((......((((((.......))))))((......)).))).)))))))))))).)))..............--...-- ( -21.60) >consensus GGC_____CAAAUAGCCCGUGAAAAUACAUUUCCAAAAGAAAUAAUGUUGUCCUCGUAUACGAAAUUCCACGGCUAUUUGGGUUAAUUAAGAACCAAAAAUGCUC ........((((((((.((((.......(((((.....)))))....((((........)))).....))))))))))))((((.......)))).......... (-16.88 = -16.50 + -0.38)
Location | 3,484,442 – 3,484,542 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 85.69 |
Mean single sequence MFE | -26.15 |
Consensus MFE | -19.50 |
Energy contribution | -18.87 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.26 |
Mean z-score | -2.82 |
Structure conservation index | 0.75 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3484442 100 - 27905053 AAGCAUUUUCGAUUCUUAAUUAACCCAAAUAGCCGUGGAAUUUCGUAUACGAAGACAACAUUAUUUCUUUUGGAAAUGUAUUUUCACGGGCUAUUUG-----GCC ........................(((((((((((((((((((((....))))).......((((((.....))))))...)))))).)))))))))-----).. ( -27.40) >DroSec_CAF1 82032 100 - 1 GAGCAUUUUUGGUUCUUAAUUAACCCAAAUAGCCGUGGAAUUUUAUAUACGAGGACAACAUUAUUUCCUUUGGUAAUGUAUUUUCACGGGCUAUUUG-----GCC ((((.......)))).........((((((((((((((((...((((((((((((..........)))))..)).))))).)))))).)))))))))-----).. ( -29.20) >DroSim_CAF1 105830 100 - 1 GAGCAUUUUUGGUUCUUAAUUAACCCAAAUAGCCGUGGAAUUUCAUAUACGAGGACAACAUUAUUUCUUUUGGAAAUGUAUUUUCACGGGCUAUUUG-----GCC ((((.......)))).........((((((((((((((((((((......)))).......((((((.....))))))...)))))).)))))))))-----).. ( -26.60) >DroYak_CAF1 146728 101 - 1 --CGA--UUCGAUUUUUAAUUAACCCAAAUAGCCGUGGUACUUCGUAUAUGAGAACAACAUUAUUUCGUUCGAAUAUGUAUUUUCACGAGCUAUUUGCAUUUGCC --...--..................(((((((((((((.....(((((....((((...........))))..))))).....))))).))))))))........ ( -21.40) >consensus GAGCAUUUUCGAUUCUUAAUUAACCCAAAUAGCCGUGGAAUUUCAUAUACGAGGACAACAUUAUUUCUUUUGGAAAUGUAUUUUCACGGGCUAUUUG_____GCC .........................(((((((((((((((...(((...(((((.............)))))...)))...))))))).))))))))........ (-19.50 = -18.87 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:23 2006