Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,461,828 – 3,461,919 |
Length | 91 |
Max. P | 0.506367 |
Location | 3,461,828 – 3,461,919 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 97.58 |
Mean single sequence MFE | -23.13 |
Consensus MFE | -20.87 |
Energy contribution | -21.37 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.06 |
Structure conservation index | 0.90 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506367 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3461828 91 - 27905053 AUGGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCAAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCG ..(.(((((.(((((.(((..((..(((((((((....)))))).))))).)))))))).))))).)((.(((...........))).)). ( -23.90) >DroSec_CAF1 60726 91 - 1 AUGGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCUAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCG ..(.(((((.(((((..(..((.((((((.........)))))).))..)....))))).))))).)((.(((...........))).)). ( -24.30) >DroSim_CAF1 75222 91 - 1 AUGGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCUAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCG ..(.(((((.(((((..(..((.((((((.........)))))).))..)....))))).))))).)((.(((...........))).)). ( -24.30) >DroEre_CAF1 69903 91 - 1 AUGGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCAAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCG ..(.(((((.(((((.(((..((..(((((((((....)))))).))))).)))))))).))))).)((.(((...........))).)). ( -23.90) >DroYak_CAF1 83220 91 - 1 AUAGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCAAGAGUUUGAUAUAUAUGCGGCUUGCGAAUGCCAAAACUACACGCAAUCG ...((((((......((((...((..((((((((....)))))).).)..))...)))).))).)))((.(((...........))).)). ( -19.60) >DroAna_CAF1 57800 91 - 1 AUGGCUGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCAAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCA ...((((((((.....)))).))(((((((((((....))))))..........((((((.....)))))))))))........))..... ( -22.80) >consensus AUGGCAGCCAUAAAUCAUGGACAUUGGCCUUGUCAAAUGGCAAGAGUUUGAUAUAUUUGCGGCUGGCGAAUGCCAAAACUACACGCAAUCG ...((.(((((.....)))).).(((((((((((....))))))..........((((((.....)))))))))))........))..... (-20.87 = -21.37 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:20 2006