Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,449,597 – 3,449,693 |
Length | 96 |
Max. P | 0.719987 |
Location | 3,449,597 – 3,449,693 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 95.48 |
Mean single sequence MFE | -19.83 |
Consensus MFE | -17.06 |
Energy contribution | -17.25 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.60 |
Structure conservation index | 0.86 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3449597 96 + 27905053 GUAGUGCGUAAAAUUUCAAUGCGAAAUCAAGAAGUUGAGCCAUAAAUUUCUAAAAUUAUUGGCACAAUUGAAGUUGUGCCUUGAAAUAUAUAUUUC ............(((((((..........(((((((........))))))).........((((((((....)))))))))))))))......... ( -20.60) >DroSec_CAF1 48336 96 + 1 GUAGUGCGUAAAAUUUCAAUGCGAAAUCAAGAAGUUGAGCCAUAAAUUUCUAAAAUUAUUGGCACAAUUGAAGUUGUGCCUUGAAAUAUAUAUUUC ............(((((((..........(((((((........))))))).........((((((((....)))))))))))))))......... ( -20.60) >DroSim_CAF1 62829 96 + 1 GUAGUGCGUAAAAUUUCAAUGCGAAAUCAAGAAGUUGAGCCAUAAAUUUCUAAAAUUAUUGGCACAAUUGAAGUUGUGCCUUGAAAUAUAUAUUUC ............(((((((..........(((((((........))))))).........((((((((....)))))))))))))))......... ( -20.60) >DroEre_CAF1 57705 94 + 1 GUAGUGCGUAAAAUUUCAAUGCGAAAUCAAGAAGUUGCGCCAUAAAUUUCCAAAAUUAUUGGCACAAUUGAAGUUGUGCCUUGA-A-AUAUAUUUC ............(((((((...........((((((........))))))..........((((((((....))))))))))))-)-))....... ( -19.00) >DroYak_CAF1 70302 95 + 1 GUAGUGCGUAAAAUUUCAAUGCGAAAUCAAGAAGUUGAGCCAUAAAUUUCUAAAAUUAUUGGCACAAUUGAAGUUGAGCUUCGAAA-AUAUAUUUC ...((((.....(((((.....)))))..(((((((........)))))))..........))))..((((((.....))))))..-......... ( -17.70) >DroAna_CAF1 46513 95 + 1 GUAGUGCGUAAAAUUUCAAUGCGAUAUCAAGAAGUUGAGCCAUAAAUUUCG-AAAUUAUUGGCACAAUUGAAGUUGUGCCUUGAAAAGUGUAUUUC .................((((((...((((((((((........)))))).-........((((((((....))))))))))))....)))))).. ( -20.50) >consensus GUAGUGCGUAAAAUUUCAAUGCGAAAUCAAGAAGUUGAGCCAUAAAUUUCUAAAAUUAUUGGCACAAUUGAAGUUGUGCCUUGAAAUAUAUAUUUC ....(((((.........)))))...((((((((((........))))))..........((((((((....))))))))))))............ (-17.06 = -17.25 + 0.19)
Location | 3,449,597 – 3,449,693 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 95.48 |
Mean single sequence MFE | -17.32 |
Consensus MFE | -14.62 |
Energy contribution | -15.15 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.05 |
Mean z-score | -1.82 |
Structure conservation index | 0.84 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3449597 96 - 27905053 GAAAUAUAUAUUUCAAGGCACAACUUCAAUUGUGCCAAUAAUUUUAGAAAUUUAUGGCUCAACUUCUUGAUUUCGCAUUGAAAUUUUACGCACUAC .........((((((((((((((......)))))))..........((((((...((.....))....))))))...)))))))............ ( -18.10) >DroSec_CAF1 48336 96 - 1 GAAAUAUAUAUUUCAAGGCACAACUUCAAUUGUGCCAAUAAUUUUAGAAAUUUAUGGCUCAACUUCUUGAUUUCGCAUUGAAAUUUUACGCACUAC .........((((((((((((((......)))))))..........((((((...((.....))....))))))...)))))))............ ( -18.10) >DroSim_CAF1 62829 96 - 1 GAAAUAUAUAUUUCAAGGCACAACUUCAAUUGUGCCAAUAAUUUUAGAAAUUUAUGGCUCAACUUCUUGAUUUCGCAUUGAAAUUUUACGCACUAC .........((((((((((((((......)))))))..........((((((...((.....))....))))))...)))))))............ ( -18.10) >DroEre_CAF1 57705 94 - 1 GAAAUAUAU-U-UCAAGGCACAACUUCAAUUGUGCCAAUAAUUUUGGAAAUUUAUGGCGCAACUUCUUGAUUUCGCAUUGAAAUUUUACGCACUAC (......((-(-((((.((......((((((((((((..((((.....))))..))))))))....))))....)).)))))))......)..... ( -18.40) >DroYak_CAF1 70302 95 - 1 GAAAUAUAU-UUUCGAAGCUCAACUUCAAUUGUGCCAAUAAUUUUAGAAAUUUAUGGCUCAACUUCUUGAUUUCGCAUUGAAAUUUUACGCACUAC ((((.....-))))((((.....))))....((((....(((((((((((((...((.....))....))))))....)))))))....))))... ( -14.40) >DroAna_CAF1 46513 95 - 1 GAAAUACACUUUUCAAGGCACAACUUCAAUUGUGCCAAUAAUUU-CGAAAUUUAUGGCUCAACUUCUUGAUAUCGCAUUGAAAUUUUACGCACUAC ((((......))))..(((((((......)))))))........-.(((((((...((((((....))))....))....)))))))......... ( -16.80) >consensus GAAAUAUAUAUUUCAAGGCACAACUUCAAUUGUGCCAAUAAUUUUAGAAAUUUAUGGCUCAACUUCUUGAUUUCGCAUUGAAAUUUUACGCACUAC ..........(((((((((((((......)))))))..........((((((...((.....))....))))))...))))))............. (-14.62 = -15.15 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:19 2006