Locus 1150

Sequence ID 3R_DroMel_CAF1
Location 3,445,786 – 3,445,902
Length 116
Max. P 0.852997
window1889

overview

Window 9

Location 3,445,786 – 3,445,902
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 94.22
Mean single sequence MFE -32.00
Consensus MFE -26.86
Energy contribution -27.22
Covariance contribution 0.36
Combinations/Pair 1.13
Mean z-score -1.59
Structure conservation index 0.84
SVM decision value 0.80
SVM RNA-class probability 0.852997
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3445786 116 - 27905053
UGAUUCAGUGCGUACCACAUAUAAUAGCCUCACUCUCGGUGCUGACAUCACCGACGUUUUCAGUUAGUUGAUUGGAAGGCUAAGUGCACUGGAUUUUUAUAUACAGACAACUAAUU
.(((((((((((.....)......(((((......((((((.......))))))...((((((((....)))))))))))))...))))))))))..................... ( -31.40)
>DroSec_CAF1 44397 116 - 1
UGAUUCAGUGCGUACCACAUAUAAUAGCCACACUCUCGGUGCUGACAUCACCGGCGUUUCCAGUUAGUUGAUUGGAAGGCUGAGUGGACUGGACUUUUAUACACAGGCAACUAAUU
.......(((.....))).(((((.((((((((((.(((((.......)))))((.(((((((((....))))))))))).)))))...))).)).)))))...((....)).... ( -31.80)
>DroSim_CAF1 58907 116 - 1
UGAUUCAGUGCGUACCACAUAUAAUAGCCUCACUCUCGGUGCUGACAUCACCGGCGUUUCCAGUUAGUUGAUUGGAAGGCUAAGUGCACUGGACUUUUAUACACAGGCAACUAAUU
...(((((((((.....)......(((((......((((((.......))))))...((((((((....)))))))))))))...))))))))...........((....)).... ( -33.40)
>DroEre_CAF1 53859 116 - 1
UGAUUCAGUGCGUGCCACAUAUAAUAGCAUCACUCUCGGUGCUCACAUCACCGGCGUUUCCAGUUAGUUGAUUGGAGGGCUAAGUGCACUGCACUUUCAUACACAGGCAACUAAUU
(((...(((((((((.((.......((((((......)))))).........(((.(((((((((....))))))))))))..)))))).))))).))).....((....)).... ( -34.80)
>DroYak_CAF1 66429 116 - 1
UGAUUCAGUGCGUGCCACAUAUAAUAGCAUCACUCUCGGUACUGACAUCACCGGCGUUUCCAGUUAGUUGAUUGGAAGGCUAAGUGCACUGGACUUUUAUACACAGCCAACUAAUU
...(((((((((((((.....................)))))..........(((.(((((((((....))))))))))))....))))))))....................... ( -28.60)
>consensus
UGAUUCAGUGCGUACCACAUAUAAUAGCCUCACUCUCGGUGCUGACAUCACCGGCGUUUCCAGUUAGUUGAUUGGAAGGCUAAGUGCACUGGACUUUUAUACACAGGCAACUAAUU
...(((((((((.....)......(((((......((((((.......))))))...((((((((....)))))))))))))...))))))))...........((....)).... (-26.86 = -27.22 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:17 2006