Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 666,895 – 667,011 |
Length | 116 |
Max. P | 0.658504 |
Location | 666,895 – 667,011 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.68 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -11.12 |
Energy contribution | -12.49 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.20 |
Mean z-score | -1.95 |
Structure conservation index | 0.44 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658504 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 666895 116 + 27905053 AGUGAGAAAGUUAACGUUGUUAACUUCACUAAUAUUAGAUACCCUUGACUUUACACAAGACUUUGUAACUAGUGGGAGUUCGAGAGAGCUCGGUUUAA-UGUGGUUAA---AGAGACAAA (((((...(((((((...)))))))))))).(((((((((.((((.....(((((........)))))..)).))((((((....)))))).))))))-))).(((..---...)))... ( -28.00) >DroSec_CAF1 86155 98 + 1 AGUCAGAAAGUUAAC---------------------AGAUACCCUUGACUUUCCACAUGAGUUUAUAACUUGUGGGAAUUCGAGGGAGCUUAGUUUAA-UGCGCUUAAAUAAGAGUUAAA ..........(((((---------------------.....(((((((.((((((((..(((.....))))))))))).)))))))..((((.(((((-.....))))))))).))))). ( -27.00) >DroSim_CAF1 83730 98 + 1 AGUGAGAAAGUUAAA---------------------AGAUACCCUUGACUUUCCACAUAAGUUUGUAACUUGUGGGAAUUCGAGGGAGCUUAGUUUAA-UGCGGUUAAAUGAGAGUUAAA ...............---------------------.....(((((((..((((.(((((((.....))))))))))).)))))))(((((.((((((-(...)))))))..)))))... ( -28.30) >DroYak_CAF1 93775 113 + 1 AAUGAGGAAGUAA-AAAAAUUAGCUCCACUAAUAUCAGAUACCUGUUACUACCCACAUGAUUUUGUAAUUUGUGAGAGUUCGAGUGAGCUCGCUUUGAAAAUUGUU------GAGAAAAA .....((.(((((-....(((((.....)))))..(((....)))))))).))((((.((((....)))))))).((((((....))))))...............------........ ( -18.30) >consensus AGUGAGAAAGUUAAA_____________________AGAUACCCUUGACUUUCCACAUGAGUUUGUAACUUGUGGGAAUUCGAGGGAGCUCAGUUUAA_UGCGGUUAA___AGAGAUAAA .........................................(((((((.((((((((.............)))))))).))))))).................................. (-11.12 = -12.49 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:34 2006