| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,444,422 – 3,444,516 |
| Length | 94 |
| Max. P | 0.995711 |
| Location | 3,444,422 – 3,444,516 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 76.53 |
| Mean single sequence MFE | -8.58 |
| Consensus MFE | -8.09 |
| Energy contribution | -7.43 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.94 |
| SVM decision value | 2.61 |
| SVM RNA-class probability | 0.995711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3444422 94 + 27905053 AACACCUUAUUCAUAAGUUUCUAAUAUCAAGAACUGAAAAUUAGAAAAAAAAAAA-UAGACAGCCUUGUCUUCCAAACAAAA-CAAACAAACAAAG-- .................((((((((.(((.....)))..))))))))........-.((((......))))...........-.............-- ( -8.50) >DroSec_CAF1 43010 84 + 1 AACACCUUAUUCACAAGUUUCUAAUAUCAAGACCUGAGAGUUAGAGAAAAAUAGU-UAGACA----UGUU--------AAAAAAAAACA-CCAAAAAG ((((.............((((((((.(((.....)))..))))))))........-......----))))--------...........-........ ( -7.93) >DroSim_CAF1 57537 81 + 1 AACACAUUAUUCAU-AGUUUCUAAUAUCAAGACCUGAGAGUUAGAGAAAAAUAGAAGAGACA----UGUU--------AAAA-UAAACA-CCAAAA-- ((((.....(((.(-(.((((((((.(((.....)))..))))))))....)))))......----))))--------....-......-......-- ( -9.30) >consensus AACACCUUAUUCAUAAGUUUCUAAUAUCAAGACCUGAGAGUUAGAGAAAAAUAGA_UAGACA____UGUU________AAAA_AAAACA_CCAAAA__ .................((((((((.(((.....)))..))))))))...........((((....))))............................ ( -8.09 = -7.43 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:16 2006