| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,429,425 – 3,429,516 |
| Length | 91 |
| Max. P | 0.514907 |
| Location | 3,429,425 – 3,429,516 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.84 |
| Mean single sequence MFE | -19.48 |
| Consensus MFE | -12.25 |
| Energy contribution | -12.73 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3429425 91 - 27905053 ----------------AAAACAACGACAACAUUGCGACGUGGCCAUUUUGACCAAUAAUAAUAAUGGUUAUGC---UGCUCUCGAAGCGACAACUCCCGCCAUCAGCAGC- ----------------...............((((...(((((.....((((((.((....)).))))))(((---(........)))).........)))))..)))).- ( -19.00) >DroVir_CAF1 38895 95 - 1 ----------------ACGACAGCAACAACAUUGCAACAACGCCAUUUUGACCAAUAUUAAUAAUGGUAAUGUUGCUGCAAUUGAAGCGACAACUGCCGCCAGCAGCAGCU ----------------......((..((..((((((.((((((((((((((......)))).))))))...)))).))))))))..)).....((((.(....).)))).. ( -22.90) >DroSec_CAF1 27596 91 - 1 ----------------AAAACAACGACAAAAUUGCGACGUGGCCAUUUUGACCAAUAAUAAUAAUGGUUAUGC---UGCUCUCGAAGCGACAACUCCCGCCAUCAGCAGC- ----------------...............((((...(((((.....((((((.((....)).))))))(((---(........)))).........)))))..)))).- ( -19.00) >DroEre_CAF1 38092 91 - 1 ----------------AAAACACCGACAACAUUGCGACGUGGCCAUUUUGACCAAUAAUAAUAAUGGUUAUGC---UGCUCUCCAAUCGACAACUCCCGCCAUCAGCAGC- ----------------.......(((.......(((.((((((((((...............)))))))))).---))).......))).........((.....))...- ( -15.90) >DroYak_CAF1 47324 91 - 1 ----------------AAAAUACCGACAACAUUGCGACGUGGCCAUUUUGACCAAUAAUAAUAAUGGUCAUGC---UGCUCUCGAACCCACAAUUCCCGCCAUCAGCAGC- ----------------...............((((...(((((.....((((((.((....)).))))))...---.......(((.......)))..)))))..)))).- ( -16.50) >DroAna_CAF1 26998 107 - 1 AAACACAAAAAAGUAAAAAACAACGACAACAUUUCGACGUGGCCAUUUUGACCAAUAUUAAUAAUGGCUAUGUUGCUGUUCCCGAAGCGACAACUCCCGCC---AGCAAA- ............((.........((..((((...(((((((((((((((((......)))).))))))))))))).))))..))..(((........))).---.))...- ( -23.60) >consensus ________________AAAACAACGACAACAUUGCGACGUGGCCAUUUUGACCAAUAAUAAUAAUGGUUAUGC___UGCUCUCGAAGCGACAACUCCCGCCAUCAGCAGC_ ...............................((((..((((((((((...............))))))))))..............(((........))).....)))).. (-12.25 = -12.73 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:13 2006