Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,426,591 – 3,426,688 |
Length | 97 |
Max. P | 0.995000 |
Location | 3,426,591 – 3,426,688 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 84.91 |
Mean single sequence MFE | -40.42 |
Consensus MFE | -25.45 |
Energy contribution | -27.57 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.00 |
Mean z-score | -2.51 |
Structure conservation index | 0.63 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3426591 97 + 27905053 UUAUUGCGAUUUUUACACUCCGUUUAUGAGCCAGGACCUGGAGCUCUGUGACCCCGGAACCCUGGGUCCCGGGCUC-------CUGGAACCUGGUCAGGAGAGG .................((((.....(((.(((((.((.(((((((.(.(((((.((...)).)))))).))))))-------).))..))))))))))))... ( -41.40) >DroSec_CAF1 24787 97 + 1 UUAUUGCGAUUUUUACACUCCGUUUAUGAGCCAGAACCUGGAGCUCUGGGACCCCGGAGCCCUGGGUCCCGGGCUC-------CUGGAACCUGGUCAGGAGCGG ...................((((((.(((.((((..((.(((((.(((((((((.((...)).)))))))))))))-------).))...))))))).)))))) ( -48.70) >DroSim_CAF1 39261 97 + 1 UUAUUGCGAUUUUUACACUCCGUUUAUGAGCCAGAACCUGGAGCUGUGGGACCCCGGAGCCCUGGGUCCCGGGCUC-------CUGGAACCUGGUCAGGAGCGG ...................((((((.(((.((((..((.((((((.((((((((.((...)).)))))))))))))-------).))...))))))).)))))) ( -45.90) >DroEre_CAF1 35452 88 + 1 UUAUUGCGAUUUUUACACUCCGUUUAUGAGCCAGAACCUGGGA----------------CCCUGGGUCCCGAGCUCCUGGAACCUGGAACCUGGUCAGGAGAGG .................((((.....(((.((((....(((((----------------((...)))))))...(((.(....).)))..)))))))))))... ( -25.70) >consensus UUAUUGCGAUUUUUACACUCCGUUUAUGAGCCAGAACCUGGAGCUCUGGGACCCCGGAGCCCUGGGUCCCGGGCUC_______CUGGAACCUGGUCAGGAGAGG ...................((((((.(((.((((.(((..(.(((((((....))))))).)..))).((((...........))))...))))))).)))))) (-25.45 = -27.57 + 2.12)
Location | 3,426,591 – 3,426,688 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.91 |
Mean single sequence MFE | -39.45 |
Consensus MFE | -31.88 |
Energy contribution | -32.50 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.15 |
Mean z-score | -3.08 |
Structure conservation index | 0.81 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.995000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3426591 97 - 27905053 CCUCUCCUGACCAGGUUCCAG-------GAGCCCGGGACCCAGGGUUCCGGGGUCACAGAGCUCCAGGUCCUGGCUCAUAAACGGAGUGUAAAAAUCGCAAUAA .(.((((((((((((..((.(-------((((((((((((...))))))))(....)...))))).)).))))).))).....)))).)............... ( -38.50) >DroSec_CAF1 24787 97 - 1 CCGCUCCUGACCAGGUUCCAG-------GAGCCCGGGACCCAGGGCUCCGGGGUCCCAGAGCUCCAGGUUCUGGCUCAUAAACGGAGUGUAAAAAUCGCAAUAA .((((((((((((((..((.(-------(((((.(((((((.((...)).))))))).).))))).)).))))).))).....))))))............... ( -45.50) >DroSim_CAF1 39261 97 - 1 CCGCUCCUGACCAGGUUCCAG-------GAGCCCGGGACCCAGGGCUCCGGGGUCCCACAGCUCCAGGUUCUGGCUCAUAAACGGAGUGUAAAAAUCGCAAUAA .((((((((((((((..((.(-------((((..(((((((.((...)).)))))))...))))).)).))))).))).....))))))............... ( -44.10) >DroEre_CAF1 35452 88 - 1 CCUCUCCUGACCAGGUUCCAGGUUCCAGGAGCUCGGGACCCAGGG----------------UCCCAGGUUCUGGCUCAUAAACGGAGUGUAAAAAUCGCAAUAA .(.((((.((((.(....).))))((((((.((.((((((...))----------------)))))).)))))).........)))).)............... ( -29.70) >consensus CCGCUCCUGACCAGGUUCCAG_______GAGCCCGGGACCCAGGGCUCCGGGGUCCCAGAGCUCCAGGUUCUGGCUCAUAAACGGAGUGUAAAAAUCGCAAUAA .((((((......(....).........((((.(((((((..((((((.((....)).))))))..)))))))))))......))))))............... (-31.88 = -32.50 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:11 2006