Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,425,912 – 3,426,007 |
Length | 95 |
Max. P | 0.997794 |
Location | 3,425,912 – 3,426,007 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 93.37 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -25.40 |
Energy contribution | -25.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.98 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995184 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3425912 95 + 27905053 AUACGCGACAUUGCGGCCACGUCAAGUAAAAUAGAUUAAUUUUACCUGUGGCCAACGGGCCAGAAGGUUGUCGUCCUCAUUCUGAUUUUUCCAUC ....(((((.....(((((((....(((((((......))))))).)))))))....((((....)))))))))..................... ( -25.40) >DroSec_CAF1 24121 95 + 1 AUACGCGACAUUGCGGCCACGUCACGUAAAAUAGAUUAAUUUUACCUGUGGCCAACGGGCCAGAAGGUUGUCGUCCUCAUCCUGAUUUUUCCAUC ....(((((.....(((((((....(((((((......))))))).)))))))....((((....)))))))))..................... ( -25.40) >DroEre_CAF1 34801 95 + 1 AUACGCGACAUUGCGGCCACGUCAAGUAAAAUAGAUUAAUUUUACCUGUGGCCAACGGGCCAGAAGGUUGUCGUCCUCAUCCUGAUUUUUCCAUC ....(((((.....(((((((....(((((((......))))))).)))))))....((((....)))))))))..................... ( -25.40) >DroYak_CAF1 41847 95 + 1 AUACGCGACAUUGCGGCCACGUCAAGUAAAAUAGAUUAAUUUUACCUGUGGCCAACGGGCCAGAAGGUUGUCGUCCUCAUCCUGAUUUUUCCCUC ....(((((.....(((((((....(((((((......))))))).)))))))....((((....)))))))))..................... ( -25.40) >DroAna_CAF1 23269 84 + 1 AUACGCGACAUUGCGGCCACGUCAAGUAAAAUAGAUUAAUUUUACCUGUGGCCAACGGGCCAGAAGGUUGUCGUCCUCAGCCCG----------- ....(((....)))(((((((....(((((((......))))))).)))))))..(((((..((.((.......)))).)))))----------- ( -28.00) >consensus AUACGCGACAUUGCGGCCACGUCAAGUAAAAUAGAUUAAUUUUACCUGUGGCCAACGGGCCAGAAGGUUGUCGUCCUCAUCCUGAUUUUUCCAUC ....(((((.....(((((((....(((((((......))))))).)))))))....((((....)))))))))..................... (-25.40 = -25.40 + 0.00)
Location | 3,425,912 – 3,426,007 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 93.37 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -26.46 |
Energy contribution | -26.66 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.90 |
SVM decision value | 2.93 |
SVM RNA-class probability | 0.997794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3425912 95 - 27905053 GAUGGAAAAAUCAGAAUGAGGACGACAACCUUCUGGCCCGUUGGCCACAGGUAAAAUUAAUCUAUUUUACUUGACGUGGCCGCAAUGUCGCGUAU (((......))).....((((........))))(((((....)))))((((((((((......))))))))))(((((((......))))))).. ( -28.40) >DroSec_CAF1 24121 95 - 1 GAUGGAAAAAUCAGGAUGAGGACGACAACCUUCUGGCCCGUUGGCCACAGGUAAAAUUAAUCUAUUUUACGUGACGUGGCCGCAAUGUCGCGUAU ((((((....((.....))........((((..(((((....))))).))))........)))))).((((((((((.......)))))))))). ( -27.70) >DroEre_CAF1 34801 95 - 1 GAUGGAAAAAUCAGGAUGAGGACGACAACCUUCUGGCCCGUUGGCCACAGGUAAAAUUAAUCUAUUUUACUUGACGUGGCCGCAAUGUCGCGUAU (((......))).....((((........))))(((((....)))))((((((((((......))))))))))(((((((......))))))).. ( -28.40) >DroYak_CAF1 41847 95 - 1 GAGGGAAAAAUCAGGAUGAGGACGACAACCUUCUGGCCCGUUGGCCACAGGUAAAAUUAAUCUAUUUUACUUGACGUGGCCGCAAUGUCGCGUAU (((((.....((.....))(.....)..)))))(((((....)))))((((((((((......))))))))))(((((((......))))))).. ( -29.50) >DroAna_CAF1 23269 84 - 1 -----------CGGGCUGAGGACGACAACCUUCUGGCCCGUUGGCCACAGGUAAAAUUAAUCUAUUUUACUUGACGUGGCCGCAAUGUCGCGUAU -----------((((((((((........)))).))))))..(((((((((((((((......)))))))))...))))))((......)).... ( -32.90) >consensus GAUGGAAAAAUCAGGAUGAGGACGACAACCUUCUGGCCCGUUGGCCACAGGUAAAAUUAAUCUAUUUUACUUGACGUGGCCGCAAUGUCGCGUAU .................((((........))))(((((....)))))((((((((((......))))))))))(((((((......))))))).. (-26.46 = -26.66 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:09 2006