Locus 1142

Sequence ID 3R_DroMel_CAF1
Location 3,415,886 – 3,415,978
Length 92
Max. P 0.800588
window1876

overview

Window 6

Location 3,415,886 – 3,415,978
Length 92
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 76.33
Mean single sequence MFE -19.65
Consensus MFE -11.60
Energy contribution -13.10
Covariance contribution 1.50
Combinations/Pair 1.16
Mean z-score -1.69
Structure conservation index 0.59
SVM decision value 0.62
SVM RNA-class probability 0.800588
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3415886 92 + 27905053
GCUUUCUUUUCAGGGCCUGGGUGCCAUUUGCAAGU-UAUAUUUGCU-UAAGCUGGCACAUUUUCCAUUUCAAUUUGGCCACCCGCCCUCCCAAC
...........(((((.(((((((((...((((((-...)))))).-.....)))))).....(((........))))))...)))))...... ( -25.40)
>DroSec_CAF1 13731 92 + 1
GCUUUCUUUCCAGGGACUGUGUGCCAUUUGCAAGU-UCUAUUUGCU-UAGACAGGCACAUUUUCCAUUUCAAUUUGGCCACCACCCCUCGCAAC
(((..........(((..(((((((.(..((((((-...)))))).-.)....)))))))..)))..........)))................ ( -21.75)
>DroSim_CAF1 24957 92 + 1
GCUUUCUUUCCAGGGACUGUGUGCCAUUUGCAAGU-UCUAUUUGCU-UAGACAGGCACAUUUUCCAUUUCAAUUUGGCCACCAGCCCUCGCAAC
((...........(((..(((((((.(..((((((-...)))))).-.)....)))))))..)))..........(((.....)))...))... ( -24.20)
>DroEre_CAF1 22925 92 + 1
GCUUCCUUUGGACGGACUGGGUGCCAUUUGCAAGU-UCUGUUUGCU-UAGACUAGCACAUUUUCCAUUUCAAUUUGGCCACACACACUGCUUAC
(((....(((((.(((....((((.....(((((.-....))))).-.......))))....)))..)))))...)))................ ( -16.12)
>DroYak_CAF1 27953 90 + 1
GCUUUCUUUCGGCGGACUUUGUGCCAUUUGCAUGU-UCUAUUUGCU-UGGACUUGCACAUUUUCCAUUUCAAUUUGGCCACA--CACUCCUUAU
(((.......)))(((.(.(((((((..((((.((-((........-.)))).)))).................))).))))--.).))).... ( -16.81)
>DroAna_CAF1 13245 73 + 1
------------UGGACUUUGUACCAUUUGCAAGUCUCUGUUUGUUUUAGUUUGGCACAUUUUCUAUUUCAAUUUGCCAGCAGAA---------
------------..(((((.(((.....))))))))(((((...........(((((.(((.........))).)))))))))).--------- ( -13.60)
>consensus
GCUUUCUUUCCAGGGACUGUGUGCCAUUUGCAAGU_UCUAUUUGCU_UAGACUGGCACAUUUUCCAUUUCAAUUUGGCCACAAACCCUCCCAAC
(((..........(((..(((((((....((((((....))))))........)))))))..)))..........)))................ (-11.60 = -13.10 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:05 2006