Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,402,270 – 3,402,430 |
Length | 160 |
Max. P | 0.987101 |
Location | 3,402,270 – 3,402,390 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -39.23 |
Consensus MFE | -36.69 |
Energy contribution | -37.03 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.08 |
Mean z-score | -1.83 |
Structure conservation index | 0.94 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3402270 120 + 27905053 GGUCUCCCUGUACUAUUAAAUGGCUUGUGCGAGAGGUGUCAGAUUCCCCAUCCGAUAACCCAUUGCUAGGAGCAGGUUGCUCCGAUAAGUUAGGGCCACCUGUGCGGUCUACCACGAAUU (((....((((((.......((((((((((((..((((((.(((.....))).))).)))..))))..(((((.....))))).))))))))((....)).))))))...)))....... ( -37.10) >DroSec_CAF1 423 120 + 1 GGUUUCUGUGUACUAUUAAAUGGCUUGUGCGAGAGGUGUCAGAUUCCCCAUUUGAUAACCCAUUGCUAGGAGCAGGUUGCUCCAAUAAGUUAGGACCACCUGAGUGGUCUCCCACGAAUU ...(((.(((..........((((((((((((..((((((((((.....))))))).)))..))))..(((((.....))))).))))))))(((((((....)))))))..)))))).. ( -40.30) >DroSim_CAF1 11203 120 + 1 GGUUUCUGUGUACUAUUAAAUGGCUUGUGCGAGAGGUGUCAGAUUUCCCAUUUGAUAACCCAUUGCUAGGAGCAGGUUGCUCCAAUAAGUUAGGACCACCUGAGUGGUCUCCCACGAAUU ...(((.(((..........((((((((((((..((((((((((.....))))))).)))..))))..(((((.....))))).))))))))(((((((....)))))))..)))))).. ( -40.30) >consensus GGUUUCUGUGUACUAUUAAAUGGCUUGUGCGAGAGGUGUCAGAUUCCCCAUUUGAUAACCCAUUGCUAGGAGCAGGUUGCUCCAAUAAGUUAGGACCACCUGAGUGGUCUCCCACGAAUU ......((((..........((((((((((((..((((((((((.....))))))).)))..))))..(((((.....))))).))))))))(((((((....)))))))..)))).... (-36.69 = -37.03 + 0.34)
Location | 3,402,310 – 3,402,430 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.31 |
Mean single sequence MFE | -35.58 |
Consensus MFE | -19.96 |
Energy contribution | -21.32 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.21 |
Mean z-score | -2.40 |
Structure conservation index | 0.56 |
SVM decision value | 2.07 |
SVM RNA-class probability | 0.987101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3402310 120 - 27905053 UCCGACAGAGCACUUGACCAGCACCCUUGGUUUAUUUCUUAAUUCGUGGUAGACCGCACAGGUGGCCCUAACUUAUCGGAGCAACCUGCUCCUAGCAAUGGGUUAUCGGAUGGGGAAUCU ......(((......((((((.....))))))...((((..((((((((....))))...((((((((...((....(((((.....))))).))....))))))))))))..))))))) ( -35.60) >DroSec_CAF1 463 120 - 1 UCCGACAGAGCACUUGACCAGGACCCUUGGUUUAUUUCUUAAUUCGUGGGAGACCACUCAGGUGGUCCUAACUUAUUGGAGCAACCUGCUCCUAGCAAUGGGUUAUCAAAUGGGGAAUCU (((..((((.((((((((((((...)))))...............((((....))))))))))).)).((((((((((((((.....)))))....))))))))).....)).))).... ( -40.60) >DroSim_CAF1 11243 120 - 1 UCCGACAGAGCACUUGACCAGGACCCUUGGCUUAUUUCUUAAUUCGUGGGAGACCACUCAGGUGGUCCUAACUUAUUGGAGCAACCUGCUCCUAGCAAUGGGUUAUCAAAUGGGAAAUCU (((....((.((((((((((((...)))))...............((((....))))))))))).)).((((((((((((((.....)))))....))))))))).......)))..... ( -40.20) >DroEre_CAF1 9450 103 - 1 UCCGACAGAGAACUUGACCAGUGCCCUUGGUUGACUUCUUAAUUCGUGGGAGACCA---------------CUUAUCGCAGGAACCUCCUCCUUGCAAUGGCUUAUCAAAUUUGGAAU-- (((((..(((((.(..(((((.....)))))..).))))).....((((....)))---------------).....((((((......))).)))...............)))))..-- ( -30.70) >DroYak_CAF1 14683 100 - 1 UCCG-------------------CCUUUGGUUUAUUUCUUAAUUCGUGGGAGACCACUGG-GCUUCCCCAACUUAUCAGAAGAAUCUCCUCCUUCCAAUGAGUUAUCAAAUGUGGAACCU ((((-------------------(.((((((..............((((....)))).((-(....)))(((((((..((((.........))))..))))))))))))).))))).... ( -30.80) >consensus UCCGACAGAGCACUUGACCAGGACCCUUGGUUUAUUUCUUAAUUCGUGGGAGACCACUCAGGUGGCCCUAACUUAUCGGAGCAACCUGCUCCUAGCAAUGGGUUAUCAAAUGGGGAAUCU (((............((((((.....))))))(((((..((((((((((....))))....................(((((.....))))).......))))))..))))).))).... (-19.96 = -21.32 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:03 2006