Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,400,139 – 3,400,403 |
Length | 264 |
Max. P | 0.757785 |
Location | 3,400,139 – 3,400,243 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.29 |
Mean single sequence MFE | -29.16 |
Consensus MFE | -23.51 |
Energy contribution | -24.32 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.03 |
Mean z-score | -1.41 |
Structure conservation index | 0.81 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3400139 104 - 27905053 CAAAAUAGCCGGAAAAUUGGAAGCGAGCUGAAGGGCGCCGGCGGGCAAAUAUUGAAAAAUUCUUAUUUGAUUUUAAUGUUGUGCUUUU----------------UCCCACAUUUUCCGCA .......((.((((((((((.((....))((((((((((....))).((((((((((...((......))))))))))))..))))))----------------).))).))))))))). ( -27.20) >DroSim_CAF1 9090 104 - 1 CAAAAUAGCCGGAAAAUUGGAAGCGAGCUGAAGGGCGCCGGCGGGCAAAUAUUGAAAAAUUGUUAUUUGAUUUUAAUGUUGUGCUUUU----------------UCCCACAUUUUCCGCA .......((.((((((((((.((....))((((((((((....))).((((((((((.............))))))))))..))))))----------------).))).))))))))). ( -25.92) >DroEre_CAF1 7364 120 - 1 CAAAAUAGCCGGAAAAUUGGAAACGAGCUGAAGCGCGCCGGCGGGCAAAUAUUGAAAAAUUGUUAUUUGAUUUUAAUGUUGGGCUUUUGCCCGCAUUUCCGCAUUUCCGCAUUUUCCGCA .......((.(((((((((((((...((....))(((...(((((((((..(..((((((((.....)))))))....)..)...))))))))).....))).)))))).))))))))). ( -38.90) >DroYak_CAF1 12792 104 - 1 CAAAAUAGCCGGAAAAUUGGAAUCGAGCUGAAGGGCGCCGGCGGGCAAAUAUUGAAAAAUUGUUAUUUGAUUUUAAUGUUGUGCUUUU----------------UUCCACAUUUACCGCA .......((.((.(((((((((..((((........(((....))).((((((((((.............))))))))))..))))..----------------))))).)))).)))). ( -24.62) >consensus CAAAAUAGCCGGAAAAUUGGAAGCGAGCUGAAGGGCGCCGGCGGGCAAAUAUUGAAAAAUUGUUAUUUGAUUUUAAUGUUGUGCUUUU________________UCCCACAUUUUCCGCA .......((.((((((((((((....((((........))))(((((((((((((((.............)))))))))).)))))..................))))).))))))))). (-23.51 = -24.32 + 0.81)
Location | 3,400,163 – 3,400,283 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.06 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -25.25 |
Energy contribution | -25.25 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.93 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3400163 120 + 27905053 AACAUUAAAAUCAAAUAAGAAUUUUUCAAUAUUUGCCCGCCGGCGCCCUUCAGCUCGCUUCCAAUUUUCCGGCUAUUUUGCCAUUGCUCUUCGCCAAUCGAGCUGUGUUCAAGUGCGCAA ...........((((((.((.....))..)))))).......((((.((((((((((.............(((......)))...((.....))....))))))).....))).)))).. ( -25.30) >DroSim_CAF1 9114 120 + 1 AACAUUAAAAUCAAAUAACAAUUUUUCAAUAUUUGCCCGCCGGCGCCCUUCAGCUCGCUUCCAAUUUUCCGGCUAUUUUGCCAUUGCUCUUCGCCAAUCGAGCUGUGUUCAAGUGCGCAA ...........((((((............)))))).......((((.((((((((((.............(((......)))...((.....))....))))))).....))).)))).. ( -25.00) >DroEre_CAF1 7404 120 + 1 AACAUUAAAAUCAAAUAACAAUUUUUCAAUAUUUGCCCGCCGGCGCGCUUCAGCUCGUUUCCAAUUUUCCGGCUAUUUUGCCAUUGCUCUUCGCCCAUCGAGCUGUGUUCAAGUGCGCAA ...........((((((............)))))).......(((((((((((((((.............(((......)))...((.....))....))))))).....)))))))).. ( -29.60) >DroYak_CAF1 12816 120 + 1 AACAUUAAAAUCAAAUAACAAUUUUUCAAUAUUUGCCCGCCGGCGCCCUUCAGCUCGAUUCCAAUUUUCCGGCUAUUUUGCCAUUGCUCUUCGCCAAUCGAGCUGUGUUCAAGUGCGCAA ...........((((((............)))))).......((((.(((((((((((((..........(((......)))...((.....)).)))))))))).....))).)))).. ( -28.80) >consensus AACAUUAAAAUCAAAUAACAAUUUUUCAAUAUUUGCCCGCCGGCGCCCUUCAGCUCGCUUCCAAUUUUCCGGCUAUUUUGCCAUUGCUCUUCGCCAAUCGAGCUGUGUUCAAGUGCGCAA ...........((((((............)))))).......((((.((((((((((.............(((......)))...((.....))....))))))).....))).)))).. (-25.25 = -25.25 + 0.00)
Location | 3,400,283 – 3,400,403 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.91 |
Mean single sequence MFE | -33.35 |
Consensus MFE | -32.97 |
Energy contribution | -33.23 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.99 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3400283 120 + 27905053 CUAACAAGCCACUUUGAGUGCUGCCACUUUGGUUGAUGUGGCUCGUAUUUACCUGUUUACCGAGUGGAGCCCUCAACGCUGGCCUAAGCCUAUUUCGGUUUAAGUUUUUUUUUUGCGCCC ..(((..(((((.(((((.(((.((((((.(((.((((.((..........)))))).)))))))))))).))))).).)))).((((((......)))))).))).............. ( -34.40) >DroSim_CAF1 9234 117 + 1 CUAACAAGCCACUUUGAGUGCUGCCACUUUGGUUGAUGUGGCUCGUAUUUACCUGUUUACCGAGUGGAGCCCUCAACGCUGGCCUAAGCCUAUUUCGGUUUAAGUUUU---UUUGCGCCC ..(((..(((((.(((((.(((.((((((.(((.((((.((..........)))))).)))))))))))).))))).).)))).((((((......)))))).)))..---......... ( -34.40) >DroEre_CAF1 7524 116 + 1 CUAACAAGCCACUUUGAGUGCUGCCACUUUAGUUGAUGUGGCUCGUAUUUACCUGUUUACCGAGUGGAGCCCUCAACGCUGGCCUAAGCCUAUUUCGGUUUAAGUUUU----UUGCACCC ..(((..(((((.(((((.(((.((((((..((.((((.((..........)))))).)).))))))))).))))).).)))).((((((......)))))).)))..----........ ( -30.20) >DroYak_CAF1 12936 117 + 1 CUAACAAGCCACUUUGAGUGCUGCCACUUUGGUUGAUGUGGCUCGUAUUUACCUGUUUACCGAGUGGAGCCCUCAACGCUGGCCUAAGCCUAUUUCGGUUUAAGUUUU---UUUUCACCC ..(((..(((((.(((((.(((.((((((.(((.((((.((..........)))))).)))))))))))).))))).).)))).((((((......)))))).)))..---......... ( -34.40) >consensus CUAACAAGCCACUUUGAGUGCUGCCACUUUGGUUGAUGUGGCUCGUAUUUACCUGUUUACCGAGUGGAGCCCUCAACGCUGGCCUAAGCCUAUUUCGGUUUAAGUUUU___UUUGCACCC ..(((..(((((.(((((.(((.((((((.(((.((((.((..........)))))).)))))))))))).))))).).)))).((((((......)))))).))).............. (-32.97 = -33.23 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:00 2006