Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,399,026 – 3,399,146 |
Length | 120 |
Max. P | 0.954256 |
Location | 3,399,026 – 3,399,146 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.56 |
Mean single sequence MFE | -40.73 |
Consensus MFE | -37.20 |
Energy contribution | -38.82 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.09 |
Mean z-score | -1.98 |
Structure conservation index | 0.91 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3399026 120 + 27905053 GCACAUUGUCGCCUCCUGGCUUAUGCAGAUCCGGUAUGAGAUUGAGCCAGAAGGAGAGGCGAUGUGCUCUAUAGUGAUUCUUGAGCUUCGGCUUGGUGUCUAUGGGAAACAUAUGAAAUA ((((((((((.(((.((((((((..((.........))....)))))))).)))...))))))))))(((((((......(..(((....)))..)...))))))).............. ( -46.00) >DroSim_CAF1 7980 120 + 1 GCACAUUAUCACCUCCUGGCUUAUGCAGAUCCGGGAUAAGAUUUAGCCAGAAGGAGAGGCGAUGUGCUCUAUAGUGAUUCUUGAGCUUUGGCUUGGUGUCUAUGGGAAACAUGUGAAAUA (((((((.((.(((.((((((.....(((((........))))))))))).))).))...)))))))(((((((......(..(((....)))..)...))))))).............. ( -35.70) >DroEre_CAF1 6314 120 + 1 GCACAUUGUCGCCGCCUGGCUUAUGCAGAUCCGGGAUGAGAUUCAGCCAGAAGGACAGGCGGUGCGCUCUAUAGUGGUUUUUGAGCUUGGGCUUGGUGUCUAUAGGAAGCAUUUGAGAGG .....((.((((((((((((....))...(((.((.((.....)).))....)))))))))))((..(((((((......(..(((....)))..)...)))))))..))....)).)). ( -40.10) >DroYak_CAF1 11680 120 + 1 GCACAUUGUCGCCUCCUGGCUUAUGCAGAUCCGGGAUAAGAUUUAGCCAGAAGGAGAGGCGAUGCGCCCUAUAGUGGUUUUUGAGCUUUGGCUUGGUGUCUAUAGGAAACAUUUGAAAUA ((.(((((((.(((.((((((.....(((((........))))))))))).)))...))))))).))(((((((......(..(((....)))..)...))))))).............. ( -41.10) >consensus GCACAUUGUCGCCUCCUGGCUUAUGCAGAUCCGGGAUAAGAUUUAGCCAGAAGGAGAGGCGAUGCGCUCUAUAGUGAUUCUUGAGCUUUGGCUUGGUGUCUAUAGGAAACAUUUGAAAUA ((((((((((.(((.((((((.....(((((........))))))))))).)))...))))))))))(((((((......(..(((....)))..)...))))))).............. (-37.20 = -38.82 + 1.62)
Location | 3,399,026 – 3,399,146 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.56 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -25.10 |
Energy contribution | -25.91 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.06 |
Mean z-score | -1.60 |
Structure conservation index | 0.86 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3399026 120 - 27905053 UAUUUCAUAUGUUUCCCAUAGACACCAAGCCGAAGCUCAAGAAUCACUAUAGAGCACAUCGCCUCUCCUUCUGGCUCAAUCUCAUACCGGAUCUGCAUAAGCCAGGAGGCGACAAUGUGC ...(((...(((((.....)))))...(((....)))...)))..........((((((((((((.....((((((((((((......)))).))....)))))))))))))...))))) ( -28.80) >DroSim_CAF1 7980 120 - 1 UAUUUCACAUGUUUCCCAUAGACACCAAGCCAAAGCUCAAGAAUCACUAUAGAGCACAUCGCCUCUCCUUCUGGCUAAAUCUUAUCCCGGAUCUGCAUAAGCCAGGAGGUGAUAAUGUGC ...(((...(((((.....)))))...(((....)))...)))..........((((((....((.((((((((((..((((......)))).......)))))))))).))..)))))) ( -27.20) >DroEre_CAF1 6314 120 - 1 CCUCUCAAAUGCUUCCUAUAGACACCAAGCCCAAGCUCAAAAACCACUAUAGAGCGCACCGCCUGUCCUUCUGGCUGAAUCUCAUCCCGGAUCUGCAUAAGCCAGGCGGCGACAAUGUGC ...............((((((......(((....))).........)))))).((((((((((((....(((((.((.....))..)))))...((....)))))))))......))))) ( -28.16) >DroYak_CAF1 11680 120 - 1 UAUUUCAAAUGUUUCCUAUAGACACCAAGCCAAAGCUCAAAAACCACUAUAGGGCGCAUCGCCUCUCCUUCUGGCUAAAUCUUAUCCCGGAUCUGCAUAAGCCAGGAGGCGACAAUGUGC ..............(((((((......(((....))).........)))))))((((((((((((.....((((((..((((......)))).......)))))))))))))...))))) ( -32.56) >consensus UAUUUCAAAUGUUUCCCAUAGACACCAAGCCAAAGCUCAAAAACCACUAUAGAGCACAUCGCCUCUCCUUCUGGCUAAAUCUCAUCCCGGAUCUGCAUAAGCCAGGAGGCGACAAUGUGC ...............((((((......(((....))).........)))))).((((((((((((.....((((((..((((......)))).......)))))))))))))...))))) (-25.10 = -25.91 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:58 2006