Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,398,866 – 3,398,986 |
Length | 120 |
Max. P | 0.925955 |
Location | 3,398,866 – 3,398,986 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -36.66 |
Consensus MFE | -30.92 |
Energy contribution | -31.11 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -2.31 |
Structure conservation index | 0.84 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3398866 120 - 27905053 CAACAACAUACCCAGCGAUGCCUCCGUGAAGCCCCUUAAUCCUCCGUACAUUUCACGGGCUGCGAACGCGGCGGCCAUGGCAAACUUUACGAUUUUUACCAACCAGGUCUUCUCGCUGCU ............((((((((((.((((((((...................))))))))(((((....)))))......))))...............(((.....)))....)))))).. ( -32.51) >DroSim_CAF1 7820 120 - 1 CAACAACAUACCCAGCGAUGCCUCCGUGAAACCCCUUAAUCCGCCGUACAUUUCACGGGCUGCGAACGCGGCAGCCAUGGCAAACUUUACGAUUUUCACCAACCAGGUCUUCUCGCUGCU ............((((((((((..(((((((...................)))))))((((((.......))))))..))))...............(((.....)))....)))))).. ( -33.11) >DroEre_CAF1 6154 120 - 1 CAACAACAUAGCCAGCGACGCCUCCGUGAAGCCGCUCAAUCCGCCGUACAUUUCACGGGCGGCGAAUGCGGCGGCCAUGGCCAACUUUACGAUUUUCACCAACCAGGUGUUCUCGCUGCU .........(((.((((((((((..((((((((((.....(((((((.......)).))))).....)))))(((....)))............))))).....)))))...)))))))) ( -44.70) >DroYak_CAF1 11520 120 - 1 CAACAACAUAGCCAGCGAUGCCUCCGUGAAGCCUCUUAAUCCGCCUUACAUUUCACGGGCUGCCAAUGCGGCGGCCAUGGCAAACUUUACGAUUUUCACCAACCAGGUUUUCUCGCUGCU .........(((.(((((((((..(((((((...................)))))))(((((((.....)))))))..))))...............(((.....)))....)))))))) ( -36.31) >consensus CAACAACAUACCCAGCGAUGCCUCCGUGAAGCCCCUUAAUCCGCCGUACAUUUCACGGGCUGCGAACGCGGCGGCCAUGGCAAACUUUACGAUUUUCACCAACCAGGUCUUCUCGCUGCU ............((((((((((..(((((((...................)))))))((((((.......))))))..))))...............(((.....)))....)))))).. (-30.92 = -31.11 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:56 2006