Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,398,078 – 3,398,198 |
Length | 120 |
Max. P | 0.600674 |
Location | 3,398,078 – 3,398,198 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -41.70 |
Consensus MFE | -38.91 |
Energy contribution | -39.10 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.60 |
Structure conservation index | 0.93 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3398078 120 - 27905053 AACAUGUGGUCACCCAUCAGCAACACUUGCAGAAUCAUCAUAAUCAAAGCAUGACCACUGUGCUGACCACGGCCGGUGGACUGGUGGUGCCCACGCCACCCACUGUGCCGGUAAUUGUGG ..(((((((((........(((.....))).................(((((.......)))))))))))(((((((((....((((((....)))))))))))).))).......))). ( -41.20) >DroSim_CAF1 7035 120 - 1 AACAUGUGGUCACCCAUCAGCAACACUUGCAGAAUCAUCAUAAUCAAAGCAUGACCACUGUGCUGACCACGGCCGGUGGACUGGUCGUGCCCACGCCACCCACUGUGCCGGUGAUUGUGG .....(..((((((..(((((.......((((..(((((.........).))))...)))))))))....(((((((((..(((.(((....)))))).)))))).)))))))))..).. ( -40.51) >DroEre_CAF1 5357 120 - 1 AACAUGUGGUCACCCAUCAGCAACACUUGCAGAAUCAUCAUAAUCAAAGCAUGACCACUGUGCUGACCACGACCGGUGGAUUGGUGGUGCCCGCGCCACCCACUGUGCCGGUGAUUGUGG .(((.(((((((..(....(((.....))).((....)).........)..)))))))))).....((((((((((((.(..(((((((....)))))))...).)))))))...))))) ( -41.90) >DroYak_CAF1 10726 120 - 1 AACAUGUGGUCACCCAUCAGCAGCACUUGCAGAAUCAUCAUAAUCAAAGCAUGACCACUGUGCUGACCACGGCCGGUGGAUUGGUGGUGCCCACGCCACCCACUGUGCCGGGGAUUGUGG .....((((....))))..((((...))))........(((((((..(((((.......)))))..((.((((((((((....((((((....)))))))))))).))))))))))))). ( -43.20) >consensus AACAUGUGGUCACCCAUCAGCAACACUUGCAGAAUCAUCAUAAUCAAAGCAUGACCACUGUGCUGACCACGGCCGGUGGACUGGUGGUGCCCACGCCACCCACUGUGCCGGUGAUUGUGG .(((.(((((((..(....((((...)))).((....)).........)..)))))))))).....((((((((((((.(..(((((((....)))))))...).)))))))...))))) (-38.91 = -39.10 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:54 2006